Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018043.1 Corchorus olitorius cultivar O-4 contig18076, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35175

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1772--1809
18
2.1
19
95
5
69
42
0
15
42
1.47
3468--3506
20
2.0
20
94
0
69
28
2
28
41
1.69
4853--4899
13
3.5
13
85
5
67
76
0
19
4
0.95
4844--4899
13
4.3
13
82
6
60
78
0
17
3
0.89
4876--4918
15
2.8
16
86
6
54
74
0
25
0
0.82
15358--15817
229
2.0
229
97
0
875
38
15
17
27
1.90
20386--20434
15
3.3
15
83
11
64
51
0
46
2
1.12
21036--21077
2
21.0
2
100
0
84
50
0
0
50
1.00
26565--26617
26
2.0
26
96
0
97
43
7
16
32
1.76
26873--26943
26
2.7
26
77
2
70
38
25
18
18
1.93
28341--28368
14
2.0
14
100
0
56
28
7
7
57
1.52
29316--29362
4
11.8
4
100
0
94
25
0
0
74
0.82
30257--30285
2
14.5
2
100
0
58
51
0
0
48
1.00
30942--31028
46
2.0
44
86
10
126
57
14
3
24
1.53
32197--32327
62
2.1
62
100
0
262
27
7
13
51
1.68

Tables:   1

The End!