Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018044.1 Corchorus olitorius cultivar O-4 contig18077, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20898

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
588--632
24
1.9
23
86
4
63
53
0
24
22
1.46
2084--2123
2
20.0
2
100
0
80
50
0
0
50
1.00
4051--4125
38
2.0
38
94
0
132
38
12
14
34
1.83
5691--6017
124
2.6
125
86
3
453
33
17
19
29
1.95
5942--6004
32
2.0
31
81
9
74
25
22
23
28
1.99
7031--7067
19
1.9
19
89
10
58
54
2
27
16
1.56
13352--13399
10
4.8
10
86
0
60
47
6
2
43
1.40
13352--13401
4
12.5
4
86
0
64
48
6
2
44
1.39
13352--13401
6
8.3
6
86
0
64
48
6
2
44
1.39
20857--20897
2
20.5
2
100
0
82
51
0
0
48
1.00

Tables:   1

The End!