Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018045.1 Corchorus olitorius cultivar O-4 contig18078, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93575

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8892--8985
27
3.4
27
89
2
134
40
24
19
15
1.90
9377--9688
35
8.9
35
85
3
396
29
23
16
30
1.97
10626--10658
1
33.0
1
93
0
57
3
0
0
96
0.20
17992--18032
21
2.0
21
85
9
57
4
41
19
34
1.73
29049--29088
3
13.3
3
100
0
80
67
0
0
32
0.91
29146--29195
26
1.9
26
87
0
73
54
10
20
16
1.70
33612--33675
32
2.1
31
82
8
78
26
18
15
39
1.91
38570--38950
163
2.3
162
89
1
566
32
19
18
29
1.96
40207--40257
22
2.3
22
89
0
84
27
19
31
21
1.97
45624--45664
19
2.2
19
100
0
82
7
46
9
36
1.65
46144--46182
2
20.5
2
84
10
55
53
0
2
43
1.14
46144--46182
17
2.3
17
95
0
69
53
0
2
43
1.14
46151--46180
15
2.0
15
93
0
51
53
0
3
43
1.17
48855--49012
41
3.9
41
93
0
244
29
14
18
37
1.91
49108--49142
16
2.2
16
89
0
52
17
25
14
42
1.86
52045--52085
21
2.0
21
85
0
55
7
17
17
58
1.60
54291--54472
51
3.4
51
73
14
168
25
12
41
20
1.88
54298--54463
56
3.0
56
71
10
169
24
12
42
20
1.87
54294--54460
54
3.1
54
71
6
165
25
11
41
20
1.87
63745--63798
20
2.7
20
82
8
56
53
18
11
16
1.72
66154--66184
6
5.2
6
100
0
62
83
0
16
0
0.64
67727--67794
22
3.1
22
62
8
57
16
2
32
48
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67704--67794
44
2.1
44
97
0
173
18
2
30
48
1.60
68691--68774
32
2.6
32
86
0
123
30
17
13
38
1.88
72342--72368
14
1.9
14
100
0
54
37
0
11
51
1.37
82004--82061
30
1.9
30
82
6
73
32
17
6
43
1.75
83912--84155
130
1.9
130
99
0
479
45
19
12
22
1.84
93453--93547
33
2.9
32
82
16
99
43
21
8
27
1.81

Tables:   1

The End!