Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018047.1 Corchorus olitorius cultivar O-4 contig18080, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 778

Length: 1297
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30


Found at i:776 original size:25 final size:24

Alignment explanation


    Indices: 739--785  Score: 69
    Period size: 26  Copynumber: 1.9  Consensus size: 24

        729 CTAGAATATT

                                      
        739 TGAAAAACTTTGATGGATGAGATGGA
          1 TGAAAAACTTTGAT-GAT-AGATGGA

                                  
        765 TGAAAAAC-TTGATGATAGATG
          1 TGAAAAACTTTGATGATAGATG

        786 AATAGAAGGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  23    5  0.24
  24    3  0.14
  25    5  0.24
  26    8  0.38

ACGTcount: A:0.40, C:0.04, G:0.28, T:0.28


Consensus pattern (24 bp):   
TGAAAAACTTTGATGATAGATGGA
Done.