Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001805.1 Corchorus olitorius cultivar O-4 contig01805, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 708

Length: 1181
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25


Found at i:899 original size:20 final size:20

Alignment explanation


    Indices: 865--921  Score: 80
    Period size: 20  Copynumber: 2.9  Consensus size: 20

        855 AGTGTCGTTG

                    *           
        865 GCGCGTGGAGGCGCGTG-TA
          1 GCGCGTGGGGGCGCGTGATA

                                 
        884 GCGCGTGGGCGGCGCGTGATA
          1 GCGCGTGGG-GGCGCGTGATA

                   *         
        905 GCGCGTGAGGGCGCGTG
          1 GCGCGTGGGGGCGCGTG

        922 CGGCGTATGT


Statistics
Matches: 34,  Mismatches: 2, Indels: 3
        0.87            0.05        0.08

Matches are distributed among these distances:
  19    8  0.24
  20   16  0.47
  21   10  0.29

ACGTcount: A:0.09, C:0.23, G:0.54, T:0.14


Consensus pattern (20 bp):   
GCGCGTGGGGGCGCGTGATA
Done.