Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018051.1 Corchorus olitorius cultivar O-4 contig18084, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70057

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4186--4225
21
1.9
21
89
0
62
27
20
37
15
1.92
14569--14712
75
1.9
74
87
1
207
50
15
4
30
1.63
23834--23881
24
2.0
24
87
0
69
39
10
33
16
1.83
32043--32284
76
3.2
76
92
2
371
33
28
16
21
1.95
37413--37488
23
3.3
22
70
13
71
48
9
23
18
1.76
37410--37502
48
1.9
48
91
0
150
44
9
24
21
1.82
40213--40336
22
5.3
22
66
17
79
48
8
23
19
1.77
40242--40325
25
3.4
25
67
18
77
45
10
22
21
1.82
40210--40350
48
2.9
48
93
0
237
45
9
24
21
1.80
40270--40344
22
3.2
22
66
20
62
46
5
28
20
1.72
40242--40322
26
3.3
26
67
20
75
45
11
22
20
1.82
42602--42727
63
2.0
63
98
0
243
19
22
26
31
1.98
46962--47030
29
2.4
29
97
0
129
34
20
28
15
1.94
52808--52914
54
2.0
54
100
0
214
42
14
5
36
1.70
53003--53140
66
2.1
66
95
0
249
35
12
14
37
1.84
55132--55161
13
2.3
13
94
0
51
50
26
3
20
1.64
59191--59226
13
2.8
13
87
12
56
38
33
5
22
1.77
63475--63566
9
10.8
9
76
15
65
45
1
1
52
1.15
63483--63563
2
44.5
2
70
22
63
46
1
1
50
1.17
64516--64582
22
3.0
22
91
2
98
44
8
0
46
1.35

Tables:   1

The End!