Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018054.1 Corchorus olitorius cultivar O-4 contig18087, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48029

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44--87
21
2.0
22
87
12
65
45
11
11
31
1.76
44--88
22
2.0
22
86
0
63
44
11
11
33
1.75
449--490
15
2.7
15
92
3
66
64
14
9
11
1.50
12765--12811
25
1.9
24
82
4
58
42
0
31
25
1.55
13171--13212
13
3.2
13
78
18
50
66
9
0
23
1.21
16702--16765
30
2.1
30
88
0
92
39
7
15
37
1.77
19084--19134
21
2.3
22
83
6
59
41
15
19
23
1.90
21993--22069
30
2.5
31
91
6
115
35
28
10
25
1.89
23333--23357
2
12.5
2
100
0
50
48
0
0
52
1.00
24195--24274
32
2.5
32
80
9
85
25
11
31
32
1.91
26625--26782
79
2.0
79
87
0
226
19
18
17
43
1.88
38328--38358
15
2.1
15
100
0
62
25
35
6
32
1.82
41185--41236
27
1.9
27
92
0
86
15
13
19
51
1.75
41652--41735
24
3.1
28
65
19
70
38
9
0
52
1.34
41721--41873
76
2.0
76
93
0
261
32
9
12
45
1.74
44220--44300
20
3.9
21
69
18
62
65
4
12
17
1.43
44206--44284
40
2.0
40
95
2
142
64
5
13
16
1.45
44254--44308
23
2.4
23
75
6
58
60
7
12
20
1.56
46204--46238
4
8.8
4
93
0
61
71
0
0
28
0.86
47356--47402
2
24.5
2
87
8
71
51
2
0
46
1.13
47852--47894
20
2.2
19
87
4
59
60
16
9
13
1.58

Tables:   1

The End!