Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018055.1 Corchorus olitorius cultivar O-4 contig18088, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44187

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7--165
3
53.3
3
93
6
279
33
0
0
66
0.92
3952--4017
29
2.3
29
83
0
87
18
12
36
33
1.88
4014--4044
14
2.2
14
94
0
53
16
6
32
45
1.72
5843--5932
42
2.1
42
100
0
180
45
12
24
17
1.83
23613--23704
27
3.4
27
84
0
112
39
26
19
15
1.91
25785--25856
37
2.0
37
83
2
92
34
9
23
31
1.87
26210--26271
27
2.3
27
91
0
97
37
14
22
25
1.92
26281--26382
27
3.8
27
92
0
159
36
17
25
20
1.94
26372--26457
27
3.3
27
66
18
81
36
10
24
29
1.89
26372--26541
52
3.3
51
80
4
209
35
8
27
28
1.87
26546--26634
42
2.1
43
91
4
144
25
15
30
28
1.96
26612--26925
89
3.5
89
82
4
418
28
17
25
29
1.97
26612--26966
89
4.0
88
80
5
390
28
17
25
28
1.97
27703--27743
20
2.0
20
95
0
73
26
9
24
39
1.86
38967--39018
2
26.5
2
96
3
97
50
50
0
0
1.00
40502--40531
15
2.1
15
93
6
53
66
6
13
13
1.43
41549--41597
23
2.1
23
96
0
89
16
20
8
55
1.66

Tables:   1

The End!