Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018058.1 Corchorus olitorius cultivar O-4 contig18091, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67247

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3233--3263
2
16.0
2
93
6
55
51
0
0
48
1.00
3862--3917
30
2.0
29
82
10
71
44
7
3
44
1.48
3871--3956
43
1.9
43
88
6
127
44
5
4
45
1.48
4749--4974
22
10.2
22
71
11
124
39
9
15
35
1.79
5053--5081
2
14.5
2
100
0
58
51
0
0
48
1.00
6376--6529
50
3.1
50
85
3
195
35
14
19
31
1.92
6393--6528
49
2.8
49
89
1
200
34
15
18
31
1.92
7168--7193
12
2.2
12
100
0
52
23
0
15
61
1.33
7576--7618
13
3.4
13
83
3
61
6
11
0
81
0.87
7576--7625
12
4.4
11
83
16
66
8
10
0
82
0.86
7576--7618
12
3.5
12
87
6
68
6
11
0
81
0.87
7577--7614
20
1.9
20
89
10
60
7
13
0
78
0.94
7579--7625
25
2.0
23
91
8
76
8
10
0
80
0.89
12388--12423
16
2.2
16
90
0
54
8
2
13
75
1.15
27078--27149
27
2.6
28
84
6
94
33
27
20
18
1.96
33953--33981
3
9.7
3
100
0
58
68
31
0
0
0.89
33984--34009
1
26.0
1
100
0
52
100
0
0
0
0.00
35536--35567
2
16.0
2
100
0
64
50
0
0
50
1.00
37413--37447
18
1.9
18
88
0
52
17
17
8
57
1.64
38370--38448
38
2.1
38
92
2
133
31
12
2
53
1.52
39465--39710
126
1.9
126
88
6
372
42
11
14
31
1.81
42616--42653
18
2.1
19
90
5
60
18
39
13
28
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42904--42974
26
2.7
26
82
2
88
19
12
23
43
1.86
42904--43004
26
3.8
26
80
7
87
18
11
26
42
1.85
43054--43105
6
8.7
6
85
10
63
86
13
0
0
0.57
43054--43106
7
7.6
7
84
16
74
86
13
0
0
0.56
50392--50436
23
1.9
24
90
4
74
31
11
17
40
1.85
60325--60405
30
2.6
32
84
5
103
29
25
1
43
1.63
60516--60591
33
2.3
33
86
0
98
14
28
40
15
1.87
60660--60696
17
2.2
16
90
4
56
35
2
0
62
1.10
60701--60729
15
1.9
15
100
0
58
31
0
13
55
1.39
60845--60925
30
2.7
31
74
11
96
29
12
44
13
1.80
64814--64960
44
3.3
44
88
1
206
35
16
13
34
1.88
65544--65587
22
2.0
22
86
4
63
52
25
11
11
1.70
67188--67247
31
2.0
30
84
9
79
28
18
15
38
1.91

Tables:   1

The End!