Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018059.1 Corchorus olitorius cultivar O-4 contig18092, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 812

Length: 1354
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37


Found at i:730 original size:31 final size:31

Alignment explanation


    Indices: 641--720  Score: 160
    Period size: 31  Copynumber: 2.6  Consensus size: 31

        631 TTCTCTGATA

                                           
        641 TTTTTCTTTTGGGACAAAAAAATCCCTTATG
          1 TTTTTCTTTTGGGACAAAAAAATCCCTTATG

                                           
        672 TTTTTCTTTTGGGACAAAAAAATCCCTTATG
          1 TTTTTCTTTTGGGACAAAAAAATCCCTTATG

                              
        703 TTTTTCTTTTGGGACAAA
          1 TTTTTCTTTTGGGACAAA

        721 TCAGTCCCTT


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   49  1.00

ACGTcount: A:0.28, C:0.15, G:0.14, T:0.44


Consensus pattern (31 bp):   
TTTTTCTTTTGGGACAAAAAAATCCCTTATG

Found at i:910 original size:31 final size:29

Alignment explanation


    Indices: 844--923  Score: 97
    Period size: 29  Copynumber: 2.7  Consensus size: 29

        834 CTCATTTTTG

                *          *       **    
        844 AAACGTAAGGGATTAATTTGTCCCGAAAA
          1 AAACATAAGGGATTATTTTGTCCAAAAAA

                                           
        873 AAACATAAGGGATTATTTTGTCCAAAAAGCA
          1 AAACATAAGGGATTATTTTGTCCAAAAA--A

                          *     
        904 AAACATAAGGGATTTTTTTG
          1 AAACATAAGGGATTATTTTG

        924 GGTATTTAGC


Statistics
Matches: 44,  Mismatches: 5, Indels: 2
        0.86            0.10        0.04

Matches are distributed among these distances:
  29   24  0.55
  31   20  0.45

ACGTcount: A:0.41, C:0.11, G:0.19, T:0.29


Consensus pattern (29 bp):   
AAACATAAGGGATTATTTTGTCCAAAAAA
Done.