Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018062.1 Corchorus olitorius cultivar O-4 contig18095, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71152

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3446--3503
29
2.0
30
89
3
91
53
1
3
41
1.28
5540--5600
9
6.7
9
74
10
61
45
3
36
14
1.62
9171--9209
13
3.0
13
85
7
53
51
23
10
15
1.73
9160--9205
13
3.3
13
82
11
56
43
28
10
17
1.82
11056--11086
15
2.0
16
93
6
55
3
12
0
83
0.75
32278--32319
15
2.7
15
88
3
57
64
14
11
9
1.50
33687--33722
19
1.9
18
94
5
63
25
22
13
38
1.91
33687--33734
11
4.7
11
85
12
59
27
18
14
39
1.90
36012--36057
21
2.1
22
92
4
76
15
15
17
52
1.76
36023--36057
10
3.4
10
84
7
52
14
11
20
54
1.70
38540--38583
14
3.1
14
80
0
52
9
11
18
61
1.55
38548--38591
14
3.1
14
80
0
52
9
15
15
59
1.61
38569--38961
63
6.2
63
82
9
381
10
15
16
58
1.64
38935--38983
24
2.2
23
89
10
75
14
10
18
57
1.65
43319--43378
29
2.0
30
87
6
86
38
8
18
35
1.81
44734--44772
16
2.5
15
83
8
51
12
12
12
61
1.57
44734--44773
15
2.6
16
88
4
55
12
12
12
62
1.55
51291--51324
16
2.1
16
89
10
52
23
0
0
76
0.79
51879--52312
113
3.8
111
77
9
329
37
18
19
24
1.94
51835--52330
152
3.2
150
79
8
491
37
18
19
24
1.94
51874--52312
78
5.7
75
81
11
437
37
18
19
24
1.94
51838--52319
39
12.6
39
73
9
330
37
18
19
24
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51835--52330
78
6.5
78
79
11
436
37
18
19
24
1.94
56906--56947
2
21.5
2
95
4
77
50
0
0
50
1.00
68569--68608
15
2.6
16
88
4
55
15
10
12
62
1.54

Tables:   1

The End!