Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018069.1 Corchorus olitorius cultivar O-4 contig18102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119663

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
180--243
31
2.1
31
85
5
85
18
6
14
60
1.54
2898--2968
29
2.4
29
97
0
133
45
0
12
42
1.42
3769--3802
14
2.4
14
95
0
59
23
8
0
67
1.18
3830--3860
15
2.1
15
100
0
62
19
6
12
61
1.53
5984--6024
21
1.9
22
85
5
57
46
29
14
9
1.77
7929--7959
15
2.1
15
100
0
62
61
12
6
19
1.53
7983--8020
14
2.7
14
91
0
67
71
0
7
21
1.11
14367--14453
38
2.3
38
84
4
95
34
8
12
44
1.72
16537--16561
9
2.8
9
100
0
50
44
8
0
48
1.32
22296--22330
17
2.1
17
100
0
70
54
5
11
28
1.59
23590--23683
45
2.2
42
86
7
127
36
4
21
38
1.73
23959--23985
12
2.2
12
100
0
54
40
18
0
40
1.51
24874--24915
20
2.0
22
90
9
70
50
4
0
45
1.23
25736--25772
12
3.1
12
88
11
58
32
13
10
43
1.79
32955--32993
12
3.2
12
100
0
78
41
7
7
43
1.62
47938--47975
19
2.0
19
89
0
58
36
18
0
44
1.50
48694--48737
24
1.9
22
90
9
70
59
13
2
25
1.46
50967--51028
32
2.0
31
87
9
90
45
19
6
29
1.75
53203--53321
49
2.4
49
98
0
229
31
8
21
37
1.84
53520--53550
15
2.1
15
93
0
53
12
9
6
70
1.31
57572--57615
21
2.0
22
83
12
56
25
13
31
29
1.94
59265--59482
64
3.5
60
89
7
289
28
18
22
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59284--59475
64
3.0
64
96
1
341
30
17
23
29
1.97
59817--59862
18
2.5
18
82
3
56
32
2
28
36
1.69
73847--73881
18
1.9
18
94
0
61
77
0
20
2
0.90
77389--77423
13
2.8
12
91
8
52
0
11
2
85
0.69
79425--79488
32
2.0
32
100
0
128
34
18
6
40
1.76
89588--89687
52
1.9
52
93
4
175
24
21
29
26
1.99
93917--93944
14
2.0
14
100
0
56
50
7
7
35
1.57
94320--94356
18
2.1
18
100
0
74
56
5
16
21
1.59
96262--96435
88
2.0
86
94
2
303
29
16
16
37
1.91
101201--101657
226
2.0
225
95
0
815
35
18
17
28
1.94
105671--105698
5
5.6
5
100
0
56
39
0
0
60
0.97
107112--107347
66
3.5
65
77
7
204
38
17
11
31
1.86
107111--107347
22
10.6
22
75
6
163
38
17
12
31
1.87
107544--107721
22
8.0
22
68
13
105
34
13
10
41
1.79
107604--107703
43
2.3
44
80
1
112
40
12
11
37
1.78
109457--109700
22
11.1
22
70
10
124
38
18
11
31
1.86
109713--109805
22
4.2
23
80
5
95
32
21
6
39
1.79
109832--109935
22
4.7
22
78
11
97
34
12
14
38
1.84
109835--109935
44
2.3
44
84
0
130
34
12
14
37
1.85
110728--110886
1
159.0
1
65
0
75
0
0
16
83
0.66
110728--110886
6
27.7
6
96
3
269
0
0
16
83
0.66

Tables:   1

The End!