genome.fa.s18072.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018072.1 Corchorus olitorius cultivar O-4 contig18105, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45289

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2248--2326	29	2.6	30	84	4	88	30	18	11	39	1.86
2450--2544	31	3.1	30	89	3	145	43	9	14	32	1.78
3157--3394	126	1.9	125	85	3	327	35	10	1	52	1.45
3755--3828	29	2.5	30	86	4	96	43	13	17	25	1.86
4045--4540	192	2.5	195	88	1	719	28	21	17	32	1.96
6022--6097	23	3.3	22	72	13	71	18	22	7	51	1.72
7796--7835	5	7.8	5	84	15	55	0	2	15	82	0.77
7796--7839	11	4.2	11	88	5	65	0	2	15	81	0.78
7786--7839	6	9.5	6	78	15	53	0	3	16	79	0.87
10592--10623	2	16.0	2	100	0	64	50	0	0	50	1.00
14016--14044	1	29.0	1	100	0	58	100	0	0	0	0.00
16192--16423	22	10.5	21	71	13	110	37	8	16	37	1.78
16223--16553	66	4.8	67	72	15	230	38	9	17	35	1.81
16193--16320	44	2.9	45	79	11	138	36	9	17	36	1.82
16428--17347	44	21.3	42	66	15	203	38	10	16	35	1.82
16428--16844	22	18.8	21	69	17	154	41	10	14	33	1.80
16938--17347	22	18.8	22	70	14	185	36	10	16	36	1.83
17113--17159	23	2.0	23	95	0	85	34	2	19	44	1.62
16990--17191	105	1.9	104	82	1	251	39	8	16	35	1.79
17317--17368	22	2.4	22	90	0	77	46	9	13	30	1.75
17400--17452	22	2.4	22	84	6	54	45	1	13	39	1.54
17429--17669	132	1.8	132	99	0	473	39	10	14	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19633--19849	92	2.4	93	81	8	230	34	13	21	30	1.92
28755--28824	36	1.9	36	91	0	113	21	10	8	60	1.55
29345--29748	201	2.0	200	95	2	718	44	8	11	36	1.70
29824--29870	25	1.9	24	95	4	85	55	8	6	29	1.55
29861--29941	39	2.0	40	92	2	137	37	3	8	50	1.51
32290--32365	29	2.5	30	80	6	100	31	9	26	32	1.88
32944--32986	22	1.9	23	86	13	63	37	13	25	23	1.92

Tables:   1

The End!