Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018073.1 Corchorus olitorius cultivar O-4 contig18106, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 88726
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Found at i:3609 original size:18 final size:19
Alignment explanation
Indices: 3586--3624 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
3576 TCAGCTTCAT
3586 TAGATTCCGAG-ATTCCAA
1 TAGATTCCGAGAATTCCAA
**
3604 TAGATTTTGAGAATTCCAA
1 TAGATTCCGAGAATTCCAA
3623 TA
1 TA
3625 ACACCACCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (19 bp):
TAGATTCCGAGAATTCCAA
Found at i:8968 original size:96 final size:97
Alignment explanation
Indices: 8846--9039 Score: 284
Period size: 96 Copynumber: 2.0 Consensus size: 97
8836 AAATCAACAC
* * *
8846 AGGGTTATTATTTGATACACCAGCGGTGTAAATTTTGCATTCCACAAGCAGG-TTGTGGAGTTGA
1 AGGGTAATTATTTGATACACCAGCGGTGTAAATTTTGCACTCCACAAGC-GGATTGTAGAGTTGA
8910 CACAT-TCCAATTTTTCAATCAATTAAGTTTTA
65 CACATGTCCAATTTTTCAATCAATTAAGTTTTA
* *
8942 AGGGTAATTATTTGATACACCGGCGGTGTAAATTTTGGACTCCACAAGCGGATTGTAGAGTTGAC
1 AGGGTAATTATTTGATACACCAGCGGTGTAAATTTTGCACTCCACAAGCGGATTGTAGAGTTGAC
* ** *
9007 ACATGTCCATTTTTTTGATTAATTAAGTTTTA
66 ACATGTCCAATTTTTCAATCAATTAAGTTTTA
9039 A
1 A
9040 ATATTTCAAT
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
95 2 0.02
96 61 0.70
97 24 0.28
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (97 bp):
AGGGTAATTATTTGATACACCAGCGGTGTAAATTTTGCACTCCACAAGCGGATTGTAGAGTTGAC
ACATGTCCAATTTTTCAATCAATTAAGTTTTA
Found at i:9229 original size:105 final size:105
Alignment explanation
Indices: 9031--9232 Score: 280
Period size: 105 Copynumber: 1.9 Consensus size: 105
9021 TTGATTAATT
* * *
9031 AAGTTTTAAATATTTCAATCTAGTCCCTAGAGGACACATATCACCCTTCATAACCCGCATGTGTA
1 AAGTTTTAAATATTTCAATCTAATCCCTAGAGAACACATATCACCCTTCATAACCCGCATATGTA
* *
9096 GTCTGCTAAACTCCACCGCCAGTATATTGTATAATTTGCC
66 GTCTACTAAACTCCACCGACAGTATATTGTATAATTTGCC
* * *
9136 AAGTTTTAAATATTTCAATCTAATCCCTAGAGAACACATGTCACCCTTCCA-GACCCGCTTATGT
1 AAGTTTTAAATATTTCAATCTAATCCCTAGAGAACACATATCACCCTT-CATAACCCGCATATGT
* * * *
9200 AGTCTACTAAATTCCACTGACGGTGTATTGTAT
65 AGTCTACTAAACTCCACCGACAGTATATTGTAT
9233 CTTATAAATC
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
105 82 0.98
106 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (105 bp):
AAGTTTTAAATATTTCAATCTAATCCCTAGAGAACACATATCACCCTTCATAACCCGCATATGTA
GTCTACTAAACTCCACCGACAGTATATTGTATAATTTGCC
Found at i:10483 original size:18 final size:19
Alignment explanation
Indices: 10453--10491 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
10443 GGACTTTGTC
*
10453 AAAGAACAAGAAAATGAAA
1 AAAGAACAAGAAAACGAAA
10472 AAAGAA-AAGAAAACGAAA
1 AAAGAACAAGAAAACGAAA
10490 AA
1 AA
10492 GATAATTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.77, C:0.05, G:0.15, T:0.03
Consensus pattern (19 bp):
AAAGAACAAGAAAACGAAA
Found at i:17933 original size:27 final size:27
Alignment explanation
Indices: 17895--17949 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
17885 TACAATTTGA
*
17895 AGATATAATAATAGCAGGTTCTACATG
1 AGATATAATAATAGCAGATTCTACATG
*
17922 AGATATAATAATAGCAGATTTTACATG
1 AGATATAATAATAGCAGATTCTACATG
17949 A
1 A
17950 TTAACAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.44, C:0.09, G:0.16, T:0.31
Consensus pattern (27 bp):
AGATATAATAATAGCAGATTCTACATG
Found at i:20225 original size:30 final size:30
Alignment explanation
Indices: 20191--20296 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 30
20181 GGCATTTTTA
* **
20191 ACATGTGGCGTGCCATGTGTCCTTTTTTGT
1 ACATGTGGCATGCCACATGTCCTTTTTTGT
*
20221 ACATGTTGCATGCCACATGTCC-TTTTT-T
1 ACATGTGGCATGCCACATGTCCTTTTTTGT
*
20249 ACATGTGGCATGCCACATGTCATTTTCTTAGT
1 ACATGTGGCATGCCACATGTCCTTTT-TT-GT
20281 ACATGTGGCATGCCAC
1 ACATGTGGCATGCCAC
20297 GTCGGACGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
28 21 0.32
29 8 0.12
30 20 0.30
32 17 0.26
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38
Consensus pattern (30 bp):
ACATGTGGCATGCCACATGTCCTTTTTTGT
Found at i:20293 original size:60 final size:58
Alignment explanation
Indices: 20185--20296 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
20175 ACACGTGGCA
* ** * *
20185 TTTTTAACATGTGGCGTGCCATGTGTCCTTTTTTGTACATGTTGCATGCCACATGTCC
1 TTTTTAACATGTGGCATGCCACATGTCATTTTTTGTACATGTGGCATGCCACATGTCC
*
20243 TTTTTTACATGTGGCATGCCACATGTCATTTTCTTAGTACATGTGGCATGCCAC
1 TTTTTAACATGTGGCATGCCACATGTCATTTT-TT-GTACATGTGGCATGCCAC
20297 GTCGGACGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
58 27 0.59
59 2 0.04
60 17 0.37
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (58 bp):
TTTTTAACATGTGGCATGCCACATGTCATTTTTTGTACATGTGGCATGCCACATGTCC
Found at i:32810 original size:19 final size:19
Alignment explanation
Indices: 32790--32826 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
32780 AATTAATTAT
32790 TTTA-ATATTAAATTTTTA
1 TTTATATATTAAATTTTTA
*
32808 TTTATATATTATATTTTTA
1 TTTATATATTAAATTTTTA
32827 CTTAAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTATATATTAAATTTTTA
Found at i:33382 original size:2 final size:2
Alignment explanation
Indices: 33375--33430 Score: 96
Period size: 2 Copynumber: 28.5 Consensus size: 2
33365 TCAAGTAATA
*
33375 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33417 AT -T AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
33431 CTAAATATTA
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 50 0.98
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37078 original size:12 final size:12
Alignment explanation
Indices: 37061--37086 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37051 TCAGTTCATA
37061 ATATTACTATTT
1 ATATTACTATTT
37073 ATATTACTATTT
1 ATATTACTATTT
37085 AT
1 AT
37087 CTTTGACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (12 bp):
ATATTACTATTT
Found at i:51736 original size:27 final size:27
Alignment explanation
Indices: 51705--51774 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
51695 TATATGCATG
51705 GAATCTGATGAACGAACAAGGGAGTGA
1 GAATCTGATGAACGAACAAGGGAGTGA
*
51732 GAATCTGATGAACGAACGAGGGAGTGA
1 GAATCTGATGAACGAACAAGGGAGTGA
*
51759 GTATCTGATGAACGAA
1 GAATCTGATGAACGAA
51775 TGGGCGAGTG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.39, C:0.11, G:0.33, T:0.17
Consensus pattern (27 bp):
GAATCTGATGAACGAACAAGGGAGTGA
Found at i:51783 original size:27 final size:26
Alignment explanation
Indices: 51707--51787 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 26
51697 TATGCATGGA
* *
51707 ATCTGATGAACGAACAAGGGAGTGAGA
1 ATCTGATGAACGAA-AGGGGAGTGAGT
*
51734 ATCTGATGAACGAACGAGGGAGTGAGT
1 ATCTGATGAACGAAAG-GGGAGTGAGT
*
51761 ATCTGATGAACGAATGGGCGAGTGAGT
1 ATCTGATGAACGAAAGGG-GAGTGAGT
51788 TGCGCTTCTC
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.04
27 46 0.96
ACGTcount: A:0.35, C:0.11, G:0.36, T:0.19
Consensus pattern (26 bp):
ATCTGATGAACGAAAGGGGAGTGAGT
Found at i:55473 original size:10 final size:10
Alignment explanation
Indices: 55433--55480 Score: 60
Period size: 12 Copynumber: 4.4 Consensus size: 10
55423 ATCAAATATA
55433 TATATGTAATG
1 TATATGT-ATG
55444 TTATATGTATG
1 -TATATGTATG
55455 TAAATATGTATG
1 T--ATATGTATG
55467 TATATGTATG
1 TATATGTATG
55477 TATA
1 TATA
55481 CCAGATTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
10 14 0.41
11 3 0.09
12 17 0.50
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.48
Consensus pattern (10 bp):
TATATGTATG
Found at i:55555 original size:10 final size:10
Alignment explanation
Indices: 55516--55562 Score: 58
Period size: 12 Copynumber: 4.3 Consensus size: 10
55506 CGGTATTTTC
55516 ATATGTAATGTT
1 ATATGT-ATG-T
55528 ATATGTATGT
1 ATATGTATGT
55538 AAATATGTATGT
1 --ATATGTATGT
55550 ATATGTATGT
1 ATATGTATGT
55560 ATA
1 ATA
55563 CCAGATTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
10 14 0.42
11 3 0.09
12 16 0.48
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (10 bp):
ATATGTATGT
Found at i:55571 original size:82 final size:82
Alignment explanation
Indices: 55434--55601 Score: 336
Period size: 82 Copynumber: 2.0 Consensus size: 82
55424 TCAAATATAT
55434 ATATGTAATGTTATATGTATGTAAATATGTATGTATATGTATGTATACCAGATTATTCAGACTCG
1 ATATGTAATGTTATATGTATGTAAATATGTATGTATATGTATGTATACCAGATTATTCAGACTCG
55499 ATTTTTCCGGTATTTTC
66 ATTTTTCCGGTATTTTC
55516 ATATGTAATGTTATATGTATGTAAATATGTATGTATATGTATGTATACCAGATTATTCAGACTCG
1 ATATGTAATGTTATATGTATGTAAATATGTATGTATATGTATGTATACCAGATTATTCAGACTCG
55581 ATTTTTCCGGTATTTTC
66 ATTTTTCCGGTATTTTC
55598 ATAT
1 ATAT
55602 TAGAATGTAC
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 86 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (82 bp):
ATATGTAATGTTATATGTATGTAAATATGTATGTATATGTATGTATACCAGATTATTCAGACTCG
ATTTTTCCGGTATTTTC
Found at i:60223 original size:16 final size:15
Alignment explanation
Indices: 60172--60225 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 15
60162 GGTTAAAAGA
*
60172 AAAAAAAAAGCATAGT
1 AAAAAAAAATCA-AGT
* *
60188 AAAAAAAATATTAAGG
1 AAAAAAAA-ATCAAGT
60204 AAAAATAAAATCAAGT
1 AAAAA-AAAATCAAGT
60220 AAAAAA
1 AAAAAA
60226 TGTGATATCA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
15 1 0.03
16 25 0.81
17 5 0.16
ACGTcount: A:0.72, C:0.04, G:0.09, T:0.15
Consensus pattern (15 bp):
AAAAAAAAATCAAGT
Found at i:63676 original size:122 final size:127
Alignment explanation
Indices: 63439--63692 Score: 383
Period size: 122 Copynumber: 2.0 Consensus size: 127
63429 ATTTAAGAAA
63439 TATATTTAAAAAAATCTAATATATATAAGTTTTTTAAATAAAATAGTAAAATGGTAAAAATAAAA
1 TATATTTAAAAAAATCTAATATATATAAGTTTTTTAAATAAAATAGTAAAATGGTAAAAAT---A
* *
63504 TAGGTATAAGGATATTAGACTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTGTAAAA
63 CA-GTATAAGGATATTAGACTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAAAA
63569 G
127 G
* *
63570 TATATTT-AAAAATTCTAATATATATAAGTTTTTTAATTAAAATAGTAAAATGGTAAAAAT-CA-
1 TATATTTAAAAAAATCTAATATATATAAGTTTTTTAAATAAAATAGTAAAATGGTAAAAATACAG
* *
63632 TA-AA-GATATTAGATTTAATTAAATAAAATTAGAGTTTTTAGTTGAGTAAAACTATAAAAG
66 TATAAGGATATTAGACTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAAAAG
63692 T
1 T
63693 TTAAACAATG
Statistics
Matches: 117, Mismatches: 6, Indels: 9
0.89 0.05 0.07
Matches are distributed among these distances:
122 54 0.46
123 2 0.02
124 2 0.02
126 1 0.01
130 51 0.44
131 7 0.06
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.37
Consensus pattern (127 bp):
TATATTTAAAAAAATCTAATATATATAAGTTTTTTAAATAAAATAGTAAAATGGTAAAAATACAG
TATAAGGATATTAGACTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAAAAG
Found at i:72505 original size:17 final size:17
Alignment explanation
Indices: 72483--72516 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
72473 AATAAATTTT
*
72483 ACTAAATGAATAATATA
1 ACTAAATAAATAATATA
72500 ACTAAATAAATAATATA
1 ACTAAATAAATAATATA
72517 TATATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.06, G:0.03, T:0.29
Consensus pattern (17 bp):
ACTAAATAAATAATATA
Found at i:72896 original size:27 final size:27
Alignment explanation
Indices: 72865--72919 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
72855 AAACACGGAG
72865 ACTAATTGAAGTAATGAGCCTCCCTAT
1 ACTAATTGAAGTAATGAGCCTCCCTAT
72892 ACTAATTGAAGTAATGAGCCTCCCTAT
1 ACTAATTGAAGTAATGAGCCTCCCTAT
72919 A
1 A
72920 TTGGGAGGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.29
Consensus pattern (27 bp):
ACTAATTGAAGTAATGAGCCTCCCTAT
Found at i:74068 original size:26 final size:26
Alignment explanation
Indices: 74038--74088 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
74028 CTAAAGATCC
*
74038 CTATATTATACAACTGTTATGGATTT
1 CTATATTATACAACTGTTACGGATTT
**
74064 CTATATTATAGGACTGTTACGGATT
1 CTATATTATACAACTGTTACGGATT
74089 GATAAACCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (26 bp):
CTATATTATACAACTGTTACGGATTT
Found at i:76673 original size:30 final size:32
Alignment explanation
Indices: 76616--76687 Score: 82
Period size: 30 Copynumber: 2.4 Consensus size: 32
76606 ACGAAATTGC
76616 AAGT-GGAGGGACTCAATTGACA-ATTTTTGT
1 AAGTAGGAGGGACTCAATTGACATATTTTTGT
* *
76646 -AGTAGGAGGGAC-CAATTTGAGATTTTTTTGT
1 AAGTAGGAGGGACTCAA-TTGACATATTTTTGT
76677 AAGTA-GAGGGA
1 AAGTAGGAGGGA
76688 TATGTCGGGT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
29 6 0.17
30 13 0.36
31 13 0.36
32 4 0.11
ACGTcount: A:0.31, C:0.07, G:0.31, T:0.32
Consensus pattern (32 bp):
AAGTAGGAGGGACTCAATTGACATATTTTTGT
Found at i:76928 original size:55 final size:55
Alignment explanation
Indices: 76844--76960 Score: 227
Period size: 55 Copynumber: 2.1 Consensus size: 55
76834 ATTATACATC
76844 GATCTCGAATAGATTTTTAGGGAAGACCTATTCAACTGATGATGTTTAAGCAGAT
1 GATCTCGAATAGATTTTTAGGGAAGACCTATTCAACTGATGATGTTTAAGCAGAT
76899 GATCTCGAATAGATTTTTAGGGAAGACCTATTCAACTGATGATGTTTAAGCAGAT
1 GATCTCGAATAGATTTTTAGGGAAGACCTATTCAACTGATGATGTTTAAGCAGAT
76954 GA-CTCGA
1 GATCTCGA
76961 CTCTGCCCAT
Statistics
Matches: 62, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
54 5 0.08
55 57 0.92
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (55 bp):
GATCTCGAATAGATTTTTAGGGAAGACCTATTCAACTGATGATGTTTAAGCAGAT
Found at i:84569 original size:29 final size:27
Alignment explanation
Indices: 84529--84590 Score: 88
Period size: 29 Copynumber: 2.2 Consensus size: 27
84519 AAAATAATAA
84529 AAAATTGAAACCAAAATGGTTCGATAATT
1 AAAATTGAAACCAAAATGGTTCG--AATT
* *
84558 AAAATTGGAACCAAAATGGTTTGAATT
1 AAAATTGAAACCAAAATGGTTCGAATT
84585 AAAATT
1 AAAATT
84591 TTTTTATCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 10 0.32
29 21 0.68
ACGTcount: A:0.48, C:0.08, G:0.15, T:0.29
Consensus pattern (27 bp):
AAAATTGAAACCAAAATGGTTCGAATT
Found at i:87005 original size:13 final size:14
Alignment explanation
Indices: 86968--87009 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 14
86958 CTCATACTTT
86968 TATATAT-ATATA-
1 TATATATAATATAG
*
86980 TATATATATTATAG
1 TATATATAATATAG
86994 TATAT-TAATATAG
1 TATATATAATATAG
87007 TAT
1 TAT
87010 GGGAGTGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 7 0.27
13 14 0.54
14 5 0.19
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (14 bp):
TATATATAATATAG
Found at i:87324 original size:31 final size:30
Alignment explanation
Indices: 87267--87367 Score: 98
Period size: 34 Copynumber: 3.2 Consensus size: 30
87257 TTGCTTAGGA
**
87267 GGCAAAATGTCCAAA-ATTA-AAGTTCAGG
1 GGCAAAATGTCCAAACCGTACAAGTTCAGG
87295 AGGCAAAATGTCCAAACCGTACAAGTTCAGG
1 -GGCAAAATGTCCAAACCGTACAAGTTCAGG
* *
87326 GGACAAAACGTCGACCAAACCGTACAAGTACAAGG
1 GG-CAAAA--T-GTCCAAACCGTACAAGTTC-AGG
87361 GGCAAAA
1 GGCAAAA
87368 GGGGCATTAA
Statistics
Matches: 61, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
29 15 0.25
30 4 0.07
31 14 0.23
33 1 0.02
34 22 0.36
35 5 0.08
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.14
Consensus pattern (30 bp):
GGCAAAATGTCCAAACCGTACAAGTTCAGG
Done.