Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018075.1 Corchorus olitorius cultivar O-4 contig18108, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4991
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:416 original size:32 final size:32

Alignment explanation


    Indices: 370--430  Score: 104
    Period size: 32  Copynumber: 1.9  Consensus size: 32

        360 AGATATGTCT

                              *             
        370 GAAAAATAAAGGTATAATGGTCGATTCAATTA
          1 GAAAAATAAAGGTATAATAGTCGATTCAATTA

                     *                   
        402 GAAAAATAAGGGTATAATAGTCGATTCAA
          1 GAAAAATAAAGGTATAATAGTCGATTCAA

        431 AAGTTTTACA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  32   27  1.00

ACGTcount: A:0.48, C:0.07, G:0.20, T:0.26


Consensus pattern (32 bp):   
GAAAAATAAAGGTATAATAGTCGATTCAATTA
Done.