Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018077.1 Corchorus olitorius cultivar O-4 contig18110, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119356

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6650--6677
6
4.7
6
100
0
56
32
67
0
0
0.91
19562--20257
144
4.9
144
88
3
999
19
25
16
37
1.93
19562--20294
282
2.6
281
89
2
1094
19
25
16
37
1.93
19361--20294
138
6.7
138
82
7
904
20
25
16
38
1.92
20079--20681
138
4.4
136
75
7
441
19
27
14
38
1.91
21360--21411
26
2.0
26
96
0
95
50
9
11
28
1.70
29109--29141
16
1.9
18
88
11
52
21
12
18
48
1.80
35709--35830
41
3.0
41
91
3
185
45
5
10
38
1.63
41095--41167
30
2.5
30
84
6
87
32
9
21
35
1.86
54844--54869
2
13.0
2
100
0
52
50
0
50
0
1.00
55471--55498
14
2.0
14
100
0
56
35
21
14
28
1.92
67605--67642
17
2.5
15
87
12
51
0
15
0
84
0.63
82351--82646
147
2.0
147
90
0
466
24
18
21
35
1.95
83917--83943
7
3.9
7
100
0
54
11
29
0
59
1.32
95426--95489
25
2.6
25
94
0
110
23
12
18
45
1.84
103661--103685
5
5.0
5
100
0
50
0
0
60
40
0.97
112217--112286
35
2.0
35
97
0
131
31
24
7
37
1.82
114044--114100
27
2.1
27
90
6
89
38
12
24
24
1.90

Tables:   1

The End!