Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018078.1 Corchorus olitorius cultivar O-4 contig18111, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 40190
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Found at i:8412 original size:19 final size:20
Alignment explanation
Indices: 8380--8419 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
8370 GTCTAATTCC
*
8380 ATTCGAGTTTGGGAGTTGGG
1 ATTCGAGTTTGGGACTTGGG
8400 ATTCGAG-TTGGGACTTGGG
1 ATTCGAGTTTGGGACTTGGG
8419 A
1 A
8420 GTTGGGACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.17, C:0.07, G:0.42, T:0.33
Consensus pattern (20 bp):
ATTCGAGTTTGGGACTTGGG
Found at i:8567 original size:25 final size:25
Alignment explanation
Indices: 8533--8587 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
8523 TCGGTTTTCA
*
8533 ATTACTAGTTTTTCATAATCTTCTT
1 ATTAATAGTTTTTCATAATCTTCTT
8558 ATTAATAGTTTTTCATAATCTTCTT
1 ATTAATAGTTTTTCATAATCTTCTT
8583 ATTAA
1 ATTAA
8588 GACTTGTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.29, C:0.13, G:0.04, T:0.55
Consensus pattern (25 bp):
ATTAATAGTTTTTCATAATCTTCTT
Found at i:8597 original size:25 final size:25
Alignment explanation
Indices: 8544--8598 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
8534 TTACTAGTTT
* * *
8544 TTCATAATCTTCTTATTAATAGTTT
1 TTCATAATCTTCTTATTAAGACTTG
8569 TTCATAATCTTCTTATTAAGACTTG
1 TTCATAATCTTCTTATTAAGACTTG
8594 TTCAT
1 TTCAT
8599 CTTGGTCTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.05, T:0.53
Consensus pattern (25 bp):
TTCATAATCTTCTTATTAAGACTTG
Found at i:8892 original size:2 final size:2
Alignment explanation
Indices: 8885--8911 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8875 TACTAAATAC
8885 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8912 CTATGCAGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:12040 original size:16 final size:16
Alignment explanation
Indices: 12009--12051 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
11999 AAGTTATTCA
*
12009 AGTTATTCA-CTTTGG
1 AGTTATTCATATTTGG
12024 AGTTATTCATATTTGG
1 AGTTATTCATATTTGG
12040 AGTTATTCATAT
1 AGTTATTCATAT
12052 GGATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 9 0.35
16 17 0.65
ACGTcount: A:0.26, C:0.09, G:0.16, T:0.49
Consensus pattern (16 bp):
AGTTATTCATATTTGG
Found at i:28316 original size:45 final size:45
Alignment explanation
Indices: 28229--28317 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
28219 CGTTATAATT
***
28229 GTTTGGAAGTTTCTGCGATTTAGACCGTTTAAAAATGGCTTACAC
1 GTTTGGAAGTTTCTGCGATTTAGACCGTTTAAAAACAACTTACAC
* * *
28274 GTTTGGAAGTTTTTGCGATTTAGATCGTTTAAGAACAACTTACA
1 GTTTGGAAGTTTCTGCGATTTAGACCGTTTAAAAACAACTTACA
28318 TTGTAATTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.37
Consensus pattern (45 bp):
GTTTGGAAGTTTCTGCGATTTAGACCGTTTAAAAACAACTTACAC
Found at i:28445 original size:60 final size:61
Alignment explanation
Indices: 28325--28455 Score: 169
Period size: 60 Copynumber: 2.2 Consensus size: 61
28315 ACATTGTAAT
* * *
28325 TTACA-GGTAACCGTTATAATTGTTTGGAAGTATATGCGATTTAGACCGTTTAAGAACAGC
1 TTACATGGTAACCGTTATAATCGTTTGGAAGTATATGCAATTTAGACAGTTTAAGAACAGC
* * *
28385 TTACATGGTAACTGTTATAATCGTTTGGAAGTCT-TGCAATTTTA-ATAGTTTAAGAACAGC
1 TTACATGGTAACCGTTATAATCGTTTGGAAGTATATGCAA-TTTAGACAGTTTAAGAACAGC
*
28445 TTACATCGTAA
1 TTACATGGTAA
28456 TCTGCATGTA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
60 33 0.53
61 29 0.47
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (61 bp):
TTACATGGTAACCGTTATAATCGTTTGGAAGTATATGCAATTTAGACAGTTTAAGAACAGC
Found at i:28644 original size:72 final size:72
Alignment explanation
Indices: 28392--28645 Score: 316
Period size: 72 Copynumber: 3.5 Consensus size: 72
28382 AGCTTACATG
* * *
28392 GTAACTGTTATAATCGTTTGGAAGTCT-TGCAATTTTA-AT-AGTTTAAGAACAGCTTACATCGT
1 GTAACCGTTATAATTGTTTGGAAGTCTCTGCAA-TTTAGATCA-TTTAAGAACGGCTTACATCGT
*
28454 AATCTGCAT
64 AATCTGCAA
** * * * *
28463 GTAACCGTTATAATTGTTTGGAAGTCTCTGTGATTTAAATCCTTTAAAAACGGTTTACATCGTAA
1 GTAACCGTTATAATTGTTTGGAAGTCTCTGCAATTTAGATCATTTAAGAACGGCTTACATCGTAA
28528 TCTGCAA
66 TCTGCAA
* * * *
28535 TTAACCGTTATAATTATTTGGAAGTTTCTGCAATTTAGATCATTTAAGAATGGCTTACATCGTAA
1 GTAACCGTTATAATTGTTTGGAAGTCTCTGCAATTTAGATCATTTAAGAACGGCTTACATCGTAA
* *
28600 CCCGCAA
66 TCTGCAA
*
28607 GTAACCGTTATAATTGTTTGGAAGTTTCTGCAATTTAGA
1 GTAACCGTTATAATTGTTTGGAAGTCTCTGCAATTTAGA
28646 CTGCAAGTAA
Statistics
Matches: 157, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
71 29 0.18
72 128 0.82
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.38
Consensus pattern (72 bp):
GTAACCGTTATAATTGTTTGGAAGTCTCTGCAATTTAGATCATTTAAGAACGGCTTACATCGTAA
TCTGCAA
Found at i:28732 original size:114 final size:116
Alignment explanation
Indices: 28529--28759 Score: 286
Period size: 114 Copynumber: 2.0 Consensus size: 116
28519 ACATCGTAAT
* * * * ***
28529 CTGCAATTAACCGTTATAATTATTTGGAAGTTTCTGCAATTTAGATCATTTAAGAATGGCTTACA
1 CTGCAAGTAACCGTTATAATTATTTAGAAG-TTCTGCAACTTAGATAATTTAAGAACAACTTACA
* * * *
28594 TCGTAACCCGCAAGTAACCGTTATAATTGTTTGGAAGTTTCTGCAATTTAGA
65 TCATAACCCGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACAATTTAGA
* *
28646 CTGCAAGTAACCGTTATAATTGTTTAGAAG-TCT-CTACTTAGATAATTTAAGAACAACTTACAT
1 CTGCAAGTAACCGTTATAATTATTTAGAAGTTCTGCAACTTAGATAATTTAAGAACAACTTACAT
* * * *
28709 CATAATCTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGA
66 CATAACCCGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACAATTTAGA
28760 TCATTTAAGA
Statistics
Matches: 97, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
114 67 0.69
115 3 0.03
117 27 0.28
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (116 bp):
CTGCAAGTAACCGTTATAATTATTTAGAAGTTCTGCAACTTAGATAATTTAAGAACAACTTACAT
CATAACCCGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACAATTTAGA
Found at i:28781 original size:186 final size:188
Alignment explanation
Indices: 28457--28831 Score: 484
Period size: 186 Copynumber: 2.0 Consensus size: 188
28447 ACATCGTAAT
* * * ** ***
28457 CTGCATGTAACCGTTATAATTGTTTGGAAGTCTCTGTGATTTAAATCCTTTAAAAACGGTTTACA
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTC-GTGACTTAAATAATTTAAAAACAACTTACA
* * * * * *
28522 TCGTAATCTGCAATTAACCGTTATAATTATTTGGAAGTTTCTGCAATTTAGATCATTTAAGAATG
65 TCATAATCTGCAAGTAACCGTTATAATTATTTAGAAGTCTCTACAATTTAGATCATTTAAGAACG
* * * *
28587 GCTTACATCGTAACCCGCAAGTAACCGTTATAATTGTTTGGAAGTTTCTGCAATTTAGA
130 ACTTACATCGTAACCCGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACAATTTAGA
* *
28646 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTC-T-ACTTAGATAATTTAAGAACAACTTACAT
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCGTGACTTAAATAATTTAAAAACAACTTACAT
* * *
28709 CATAATCTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACGA
66 CATAATCTGCAAGTAACCGTTATAATTATTTAGAAGTCTCTACAATTTAGATCATTTAAGAACGA
* * * *
28774 TTTACATCGTAATCTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACAATTTAGA
131 CTTACATCGTAACCCGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACAATTTAGA
28832 TCATTTAAGA
Statistics
Matches: 159, Mismatches: 27, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
186 126 0.79
187 1 0.01
189 32 0.20
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (188 bp):
CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCGTGACTTAAATAATTTAAAAACAACTTACAT
CATAATCTGCAAGTAACCGTTATAATTATTTAGAAGTCTCTACAATTTAGATCATTTAAGAACGA
CTTACATCGTAACCCGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACAATTTAGA
Found at i:28790 original size:72 final size:72
Alignment explanation
Indices: 28646--29199 Score: 704
Period size: 72 Copynumber: 7.7 Consensus size: 72
28636 GCAATTTAGA
* *
28646 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTAC---TTAGATAATTTAAGAACAACTTACA
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACGACTTACA
*
28708 TCATAAT
66 TCGTAAT
* *
28715 CTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACGATTTACA
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACGACTTACA
28780 TCGTAAT
66 TCGTAAT
* * *
28787 CTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACAATTTAGATCATTTAAGAACGATTTACA
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACGACTTACA
28852 TCGTAAT
66 TCGTAAT
* * * *
28859 CTGCAGGTAACCGTTATAATTGTTTAGAACTCTCTATGATTTAGATCATTTAAGAACGATTTACA
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACGACTTACA
*
28924 TGGTAAT
66 TCGTAAT
* * * *
28931 CTGCAGGTAACCGTTATGATTGTTTAGAAGTCTCTACGATTTAGATCGTTTAATAAGAACAACTT
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATC-ATT--TAAGAACGACTT
28996 ACATCGTAAT
63 ACATCGTAAT
* * * * **
29006 ATGCAAGTAACCGATATAATTGTTTGGAAGTTTCTGA-GATTTAGATTGTTTAAGAACGACTTAC
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCT-ACGATTTAGATCATTTAAGAACGACTTAC
*
29070 ATCATAAT
65 ATCGTAAT
* * * * ** *
29078 ATGCAAGTAACCGTTATAATTGTTTGGAAGTTTTTGTGATTTAGATCGTTTAAGAACGACTTACA
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACGACTTACA
29143 TCGTAAT
66 TCGTAAT
* * * * *
29150 CTACAAGTAACAGTTATAATTGTTTGGAAGTTTCCGA-GATTTAGATCATT
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCT-CTACGATTTAGATCATT
29200 GCTTACATGT
Statistics
Matches: 437, Mismatches: 39, Indels: 15
0.89 0.08 0.03
Matches are distributed among these distances:
69 36 0.08
72 339 0.78
73 2 0.00
74 2 0.00
75 57 0.13
76 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (72 bp):
CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACGACTTACA
TCGTAAT
Found at i:28903 original size:258 final size:258
Alignment explanation
Indices: 28433--28903 Score: 690
Period size: 258 Copynumber: 1.8 Consensus size: 258
28423 ATTTTAATAG
* * * * **
28433 TTTAAGAACAGCTTACATCGTAATCTGCATGTAACCGTTATAATTGTTTGGAAGTCTCTGTGATT
1 TTTAAGAACAACTTACATCATAATCTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATT
* * * * *
28498 TAAATCCTTTAAAAACGGTTTACATCGTAATCTGCAATTAACCGTTATAATTATTTGGAAGTTTC
66 TAAATCATTTAAAAACGATTTACATCGTAATCTGCAAGTAACCGTTATAATTATTTAGAAGTCTC
* * * *
28563 TGCAATTTAGATCATTTAAGAATGGCTTACATCGTAACCCGCAAGTAACCGTTATAATTGTTTGG
131 TACAATTTAGATCATTTAAGAACGACTTACATCGTAACCCGCAAGTAACCGTTATAATTGTTTAG
* * *
28628 AAGTTTCTGCAATTTAGACTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACTTAGATAA
196 AACTCTCTACAATTTAGACTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACTTAGATAA
28691 TTTAAGAACAACTTACATCATAATCTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATT
1 TTTAAGAACAACTTACATCATAATCTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATT
* * * *
28756 TAGATCATTTAAGAACGATTTACATCGTAATCTGCAGGTAACCGTTATAATTGTTTAGAAGTCTC
66 TAAATCATTTAAAAACGATTTACATCGTAATCTGCAAGTAACCGTTATAATTATTTAGAAGTCTC
* * * *
28821 TACAATTTAGATCATTTAAGAACGATTTACATCGTAATCTGCAGGTAACCGTTATAATTGTTTAG
131 TACAATTTAGATCATTTAAGAACGACTTACATCGTAACCCGCAAGTAACCGTTATAATTGTTTAG
**
28886 AACTCTCTATGATTTAGA
196 AACTCTCTACAATTTAGA
28904 TCATTTAAGA
Statistics
Matches: 185, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
258 185 1.00
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (258 bp):
TTTAAGAACAACTTACATCATAATCTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATT
TAAATCATTTAAAAACGATTTACATCGTAATCTGCAAGTAACCGTTATAATTATTTAGAAGTCTC
TACAATTTAGATCATTTAAGAACGACTTACATCGTAACCCGCAAGTAACCGTTATAATTGTTTAG
AACTCTCTACAATTTAGACTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACTTAGATAA
Found at i:30710 original size:61 final size:60
Alignment explanation
Indices: 30635--30760 Score: 189
Period size: 60 Copynumber: 2.1 Consensus size: 60
30625 GTAATCTGCA
* *
30635 GGTAACCGTTATAATTGTTTGGAAGTATATGCGATTTAAACCGTTTAAGAACAGCTTACAT
1 GGTAACCGTTATAATCGTTTGGAAGTAT-TGCGATTTAAACAGTTTAAGAACAGCTTACAT
* * *
30696 GGTAACCGTTATAATCGTTTGGAAGTCTTGCGATTTTAATAGTTTAAGAACAGCTTACAT
1 GGTAACCGTTATAATCGTTTGGAAGTATTGCGATTTAAACAGTTTAAGAACAGCTTACAT
*
30756 CGTAA
1 GGTAA
30761 TCCGCATGTA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
60 33 0.56
61 26 0.44
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (60 bp):
GGTAACCGTTATAATCGTTTGGAAGTATTGCGATTTAAACAGTTTAAGAACAGCTTACAT
Found at i:30845 original size:72 final size:72
Alignment explanation
Indices: 30698--30950 Score: 334
Period size: 72 Copynumber: 3.5 Consensus size: 72
30688 GCTTACATGG
* * *
30698 TAACCGTTATAATCGTTTGGAAGTCT-TGCGATTTTA-AT-AGTTTAAGAACAGCTTACATCGTA
1 TAACCGTTATAATTGTTTGGAAGTCTCTGC-AATTTAGATCA-TTTAAGAACGGCTTACATCGTA
30760 ATCCGC-AT
64 ATCCGCAAT
* * *
30768 GTAACCGTTATAATTGTTTGGAAGTCTCTGCAATTTAGATCCTTTAAAAACGGTTTACATCGTAA
1 -TAACCGTTATAATTGTTTGGAAGTCTCTGCAATTTAGATCATTTAAGAACGGCTTACATCGTAA
30833 TCCGCAAT
65 TCCGCAAT
* * * *
30841 TAACCGTTATAATTATTTGGAAGTTTCTGCAATTTAGATCATTTAAGAATGGCTTACATCGTAAC
1 TAACCGTTATAATTGTTTGGAAGTCTCTGCAATTTAGATCATTTAAGAACGGCTTACATCGTAAT
*
30906 CCGCAAG
66 CCGCAAT
* *
30913 TAACCGTTATAATTGTTTGGCAGTTTCTGCAATTTAGA
1 TAACCGTTATAATTGTTTGGAAGTCTCTGCAATTTAGA
30951 CTGCAAGTAA
Statistics
Matches: 162, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
71 30 0.19
72 130 0.80
73 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (72 bp):
TAACCGTTATAATTGTTTGGAAGTCTCTGCAATTTAGATCATTTAAGAACGGCTTACATCGTAAT
CCGCAAT
Found at i:30995 original size:45 final size:45
Alignment explanation
Indices: 30908--30995 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 45
30898 ATCGTAACCC
* * * * *
30908 GCAAGTAACCGTTATAATTGTTTGGCAGTTTCTGCAATTTAGACT
1 GCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACAACTTAGACT
*
30953 GCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGACTTAGA
1 GCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACAACTTAGA
30996 TAATTTAAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (45 bp):
GCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACAACTTAGACT
Found at i:31089 original size:189 final size:189
Alignment explanation
Indices: 30768--31119 Score: 470
Period size: 189 Copynumber: 1.9 Consensus size: 189
30758 TAATCCGCAT
* * * ** *** *
30768 GTAACCGTTATAATTGTTTGGAAGTCTCTGCAATTTAGATCCTTTAAAAACGGTTTACATCGTAA
1 GTAACCGTTATAATTGTTTAGAAGTCTCTACAACTTAGATAATTTAAAAACAAATTACATCATAA
* * * * * *
30833 TCCGCAATTAACCGTTATAATTATTTGGAAGTTTCTGCAATTTAGATCATTTAAGAATGGCTTAC
66 TCCGCAAGTAACCGTTATAATTATTTAGAAGTCTCTACAATTTAGATCATTTAAGAACGACTTAC
30898 ATCGTAACCCGCAAGTAACCGTTATAATTGTTTGGCAGTTTCTGCAATTTAGACTGCAA
131 ATCGTAACCCGCAAGTAACCGTTATAATTGTTTGGCAGTTTCTGCAATTTAGACTGCAA
* *
30957 GTAACCGTTATAATTGTTTAGAAGTCTCTACGACTTAGATAATTTAAGAACAAATTACATCATAA
1 GTAACCGTTATAATTGTTTAGAAGTCTCTACAACTTAGATAATTTAAAAACAAATTACATCATAA
** * * * *
31022 TTTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACGATTTAC
66 TCCGCAAGTAACCGTTATAATTATTTAGAAGTCTCTACAATTTAGATCATTTAAGAACGACTTAC
* * *
31087 ATCGTAATCTGCAGGTAACCGTTATAATTGTTT
131 ATCGTAACCCGCAAGTAACCGTTATAATTGTTT
31120 AGAAGTCTCT
Statistics
Matches: 137, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
189 137 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (189 bp):
GTAACCGTTATAATTGTTTAGAAGTCTCTACAACTTAGATAATTTAAAAACAAATTACATCATAA
TCCGCAAGTAACCGTTATAATTATTTAGAAGTCTCTACAATTTAGATCATTTAAGAACGACTTAC
ATCGTAACCCGCAAGTAACCGTTATAATTGTTTGGCAGTTTCTGCAATTTAGACTGCAA
Found at i:31211 original size:261 final size:260
Alignment explanation
Indices: 30697--31211 Score: 681
Period size: 261 Copynumber: 2.0 Consensus size: 260
30687 AGCTTACATG
* * * * ** *
30697 GTAACCGTTATAATCGTTTGGAAGTCTTGCGATTTTAATAGTTTAAGAACAGCTTACATCGTAAT
1 GTAACCGTTATAATCGTTTAGAAGTCTTACGATCTTAATAATTTAAGAACAAATTACATCATAAT
* * * * *
30762 CCGCATGTAACCGTTATAATTGTTTGGAAGTCTCTGCAATTTAGATCCTTTAAAAACGGTTTACA
66 CCGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACAATTTAGATCATTTAAAAACGATTTACA
* * * * *
30827 TCGTAATCCGCAATTAACCGTTATAATTATTTGGAAGTTTCTGCAATTTAGATCATTTAAGAATG
131 TCGTAATCCGCAAGTAACCGTTATAATTATTTAGAAGTCTCTACAATTTAGATCATTTAAGAACG
* * * * *
30892 GCTTACATCGTAACCCGCAAGTAACCGTTATAATTGTTTGGCAGTTTCTGCAATTTAGACTGCAA
196 ACTTACATCGTAACCCGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACAATTTAGACTGCAA
*
30957 GTAACCGTTATAATTGTTTAGAAGTCTCTACGA-CTTAGATAATTTAAGAACAAATTACATCATA
1 GTAACCGTTATAATCGTTTAGAAGTCT-TACGATCTTA-ATAATTTAAGAACAAATTACATCATA
** * *
31021 ATTTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACGATTTA
64 ATCCGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACAATTTAGATCATTTAAAAACGATTTA
* * * *
31086 CATCGTAATCTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAA
129 CATCGTAATCCGCAAGTAACCGTTATAATTATTTAGAAGTCTCTACAATTTAGATCATTTAAGAA
* * * * *
31151 CGATTTACATCGTAATCTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGA
194 CGACTTACATCGTAACCCGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACAATTTAGA
31212 TCGTTTAATA
Statistics
Matches: 217, Mismatches: 36, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
260 28 0.13
261 189 0.87
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.36
Consensus pattern (260 bp):
GTAACCGTTATAATCGTTTAGAAGTCTTACGATCTTAATAATTTAAGAACAAATTACATCATAAT
CCGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACAATTTAGATCATTTAAAAACGATTTACA
TCGTAATCCGCAAGTAACCGTTATAATTATTTAGAAGTCTCTACAATTTAGATCATTTAAGAACG
ACTTACATCGTAACCCGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACAATTTAGACTGCAA
Found at i:31379 original size:218 final size:216
Alignment explanation
Indices: 30951--31409 Score: 618
Period size: 218 Copynumber: 2.1 Consensus size: 216
30941 GCAATTTAGA
30951 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGACTTAGATAATTTAAGAACAAATTACA
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGACTTAGATAATTTAAGAACAAATTACA
* * * *
31016 TCATAATTTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACG
66 TCATAATATGCAAGTAACCGGTATAATTGTTTAGAAGTCTATACGATTTAGATCATTTAAGAACG
* * *
31081 ATTTACATCGTAATCTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTT
131 ACTTACATCGTAATATGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTT
*
31146 AAGAACGATTTACATCGTAAT
196 AAGAACGACTTACATCGTAAT
* * ** *
31167 CTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCGTTTAATAAGAACAACTT
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGACTTAGAT-AATT--TAAGAACAAATT
* * ** * **
31232 ACATCGTAATATGCAAGTAACCGGTATAATTGTTTGGTTGTTTATGA-GATTTAGATTGTTTAAG
63 ACATCATAATATGCAAGTAACCGGTATAATTGTTTAGAAGTCTAT-ACGATTTAGATCATTTAAG
* * *
31296 AACGACTTA-ATCGTAATATGCAAGTAACCGTTATAATTGTTTGGAAGTTTTTGA-GATTTAGAT
127 AACGACTTACATCGTAATATGCAAGTAACCGTTATAATTGTTTAGAAGTCTCT-ACGATTTAGAT
*
31359 CGTTTAAGAACGACTTACATCGTAAT
191 CATTTAAGAACGACTTACATCGTAAT
* *
31385 CTACAAGTAATCGTTATAATTGTTT
1 CTGCAAGTAACCGTTATAATTGTTT
31410 GGAAATTTCC
Statistics
Matches: 211, Mismatches: 27, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
216 44 0.21
217 2 0.01
218 93 0.44
219 71 0.34
220 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (216 bp):
CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGACTTAGATAATTTAAGAACAAATTACA
TCATAATATGCAAGTAACCGGTATAATTGTTTAGAAGTCTATACGATTTAGATCATTTAAGAACG
ACTTACATCGTAATATGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTT
AAGAACGACTTACATCGTAAT
Found at i:31431 original size:72 final size:72
Alignment explanation
Indices: 30951--31409 Score: 591
Period size: 72 Copynumber: 6.3 Consensus size: 72
30941 GCAATTTAGA
* * * *
30951 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGACTTAGATAATTTAAGAACAAATTACA
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACGACTTACA
*
31016 TCATAAT
66 TCGTAAT
* * *
31023 TTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACGATTTACA
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACGACTTACA
31088 TCGTAAT
66 TCGTAAT
* *
31095 CTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACGATTTACA
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACGACTTACA
31160 TCGTAAT
66 TCGTAAT
* * *
31167 CTGCAGGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCGTTTAATAAGAACAACTT
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATC-ATT--TAAGAACGACTT
31232 ACATCGTAAT
63 ACATCGTAAT
* * * ** * * **
31242 ATGCAAGTAACCGGTATAATTGTTTGGTTGTTTATGA-GATTTAGATTGTTTAAGAACGACTTA-
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCT-ACGATTTAGATCATTTAAGAACGACTTAC
31305 ATCGTAAT
65 ATCGTAAT
* * * * *
31313 ATGCAAGTAACCGTTATAATTGTTTGGAAGTTTTTGA-GATTTAGATCGTTTAAGAACGACTTAC
1 CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCT-ACGATTTAGATCATTTAAGAACGACTTAC
31377 ATCGTAAT
65 ATCGTAAT
* *
31385 CTACAAGTAATCGTTATAATTGTTT
1 CTGCAAGTAACCGTTATAATTGTTT
31410 GGAAATTTCC
Statistics
Matches: 352, Mismatches: 30, Indels: 10
0.90 0.08 0.03
Matches are distributed among these distances:
71 66 0.19
72 225 0.64
73 2 0.01
74 2 0.01
75 56 0.16
76 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (72 bp):
CTGCAAGTAACCGTTATAATTGTTTAGAAGTCTCTACGATTTAGATCATTTAAGAACGACTTACA
TCGTAAT
Found at i:35756 original size:94 final size:94
Alignment explanation
Indices: 35585--35842 Score: 283
Period size: 94 Copynumber: 2.7 Consensus size: 94
35575 AAAAACTTTA
* * * * * * * *
35585 ATTTCACTGAAATTTACGGCTCACA-AAATATATTT-ATTGTTCTAACAAATATTATTCTTTTAT
1 ATTTCACAGGAATTTTCGGCTTACAGAAA-AT-TTTAATTGGTCCAACATATATTATTCATTTAT
35648 GAACATTGCTCTTAGAAAACTCTG-AAGAAGG
64 GAACATTGCTCTTAGAAAACTCTGAAAG-AGG
* * * * *
35679 ATTTTACCGGAATTTAT-GGTTTAGA-AAAGATTTTAATTGGTCCAACATATTTTATTCATTTAT
1 ATTTCACAGGAATTT-TCGGCTTACAGAAA-ATTTTAATTGGTCCAACATATATTATTCATTTAT
*
35742 GAACATTGCTCTTAGAAGACTCTGAAAGAGG
64 GAACATTGCTCTTAGAAAACTCTGAAAGAGG
* * *
35773 ATTTCACAGGAATTTTCGGCTTACAGAAAATTTTTATTGGTCCAACATGTATTCTTCATTTATGA
1 ATTTCACAGGAATTTTCGGCTTACAGAAAATTTTAATTGGTCCAACATATATTATTCATTTATGA
35838 ACATT
66 ACATT
35843 CATTGATTGA
Statistics
Matches: 137, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
93 4 0.03
94 127 0.93
95 6 0.04
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (94 bp):
ATTTCACAGGAATTTTCGGCTTACAGAAAATTTTAATTGGTCCAACATATATTATTCATTTATGA
ACATTGCTCTTAGAAAACTCTGAAAGAGG
Found at i:36129 original size:52 final size:53
Alignment explanation
Indices: 36067--36166 Score: 130
Period size: 53 Copynumber: 1.9 Consensus size: 53
36057 AAAGTGCAAC
* * *
36067 ATCTGCAAACCATATG-GGGGATCAGAGATTACCACCTAAAATCACCACGGGT
1 ATCTGCAAACCAAACGAGGGGATCAGAGATTACCACCCAAAATCACCACGGGT
* * * *
36119 ATCTGTAAACCAAACGAGGTGATCTGAGATTACCACCCAAGATCACCA
1 ATCTGCAAACCAAACGAGGGGATCAGAGATTACCACCCAAAATCACCA
36167 GAGGTGATCA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
52 13 0.32
53 27 0.68
ACGTcount: A:0.36, C:0.26, G:0.19, T:0.19
Consensus pattern (53 bp):
ATCTGCAAACCAAACGAGGGGATCAGAGATTACCACCCAAAATCACCACGGGT
Found at i:36372 original size:94 final size:93
Alignment explanation
Indices: 36208--36469 Score: 357
Period size: 94 Copynumber: 2.8 Consensus size: 93
36198 CCCCCTAAAG
36208 GAGGATTTCACCGGAATTTACGGCTTACAAAATATTTTTATTGGTCCAACATGTATTATTCAGTT
1 GAGGATTTCACCGGAATTTACGGCTTAC-AAATATTTTTATTGGTCCAACATGTATTATTCA-TT
*
36273 T-TGAACATTGCACTTACAAAACTCTGAA-
64 TATGAACATTGCACTTACAAAACTCCGAAT
** **
36301 GAAGGATTTCACCCAAATTTTTGGCTTACGAAATATTTTTATTGGTCCAACATGTATTATTCATT
1 G-AGGATTTCACCGGAATTTACGGCTTAC-AAATATTTTTATTGGTCCAACATGTATTATTCATT
* *
36366 TATGAACATTGCTCTTAGAAAACTCCGAAT
64 TATGAACATTGCACTTACAAAACTCCGAAT
* * * * *
36396 GAGGATTTTACCGGAATTTAGGGCTTACACAAGATTTTTATTGGTCAAACATGTATTATTCATTC
1 GAGGATTTCACCGGAATTTACGGCTTACA-AATATTTTTATTGGTCCAACATGTATTATTCATTT
36461 ATGAACATT
65 ATGAACATT
36470 AATTGAATTG
Statistics
Matches: 149, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
93 5 0.03
94 143 0.96
95 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (93 bp):
GAGGATTTCACCGGAATTTACGGCTTACAAATATTTTTATTGGTCCAACATGTATTATTCATTTA
TGAACATTGCACTTACAAAACTCCGAAT
Found at i:36670 original size:94 final size:94
Alignment explanation
Indices: 36561--36976 Score: 489
Period size: 94 Copynumber: 4.4 Consensus size: 94
36551 TACAAAATAA
* * * * *
36561 TTTTATTGGTCCAACATGTATAATTTATTTATGAACACTGCTCTTAGAAAACTTTAAAGGAGGAT
1 TTTTATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCTTAGAAAACTCTAAAAGAGGAT
* * *
36626 TTCCCCAGAATTTACGATTTAGA-AAGGAT
66 TTCACCAGAATTTACGACTTACACAA-GAT
* * * *
36655 TTTTATTGGTCCAACATGTATTATTCAGTTATGAACATTGCTCTTACAAAACTCCAAAAAAGGAT
1 TTTTATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCTTAGAAAACTCTAAAAGAGGAT
* * *
36720 TTCACC-GAAATTTACGGCTGACAAAAGAT
66 TTCACCAG-AATTTACGACTTACACAAGAT
* * *
36749 TTTTATTGGTCCAAGATGTATTATTCATTTATTGAACATTGCTCTTAGAAAACTCTGAAGGAGGA
1 TTTTATTGGTCCAACATGTATTATTCATTTA-TGAACATTGCTCTTAGAAAACTCTAAAAGAGGA
*
36814 TTTCACCAGATTTTACGGA-TTACACAAGAT
65 TTTCACCAGAATTTAC-GACTTACACAAGAT
* * * * * *
36844 TTTTTTTAGTCCAACATGTATCATTCATTTATGAACATTGCTCATAGAGAATTCTAAAAGAGGAT
1 TTTTATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCTTAGAAAACTCTAAAAGAGGAT
* * * * *
36909 TTCA-TAGGAATTCACGGCTTACAGAATAT
66 TTCACCA-GAATTTACGACTTACACAAGAT
36938 TTTTATTGGTCCAACATGTATTATTCATTTATGAACATT
1 TTTTATTGGTCCAACATGTATTATTCATTTATGAACATT
36977 AATTGATTGA
Statistics
Matches: 272, Mismatches: 43, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
93 3 0.01
94 188 0.69
95 79 0.29
96 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (94 bp):
TTTTATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCTTAGAAAACTCTAAAAGAGGAT
TTCACCAGAATTTACGACTTACACAAGAT
Found at i:36942 original size:189 final size:188
Alignment explanation
Indices: 36545--36976 Score: 571
Period size: 189 Copynumber: 2.3 Consensus size: 188
36535 CTGAAAATAT
* * * * *
36545 ACGGTTTACAAAATAATTTTATTGGTCCAACATGTATAATTTATTTATGAACACTGCTCTTAGAA
1 ACGGCTTACAAAATATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCTTAGAA
* * * *
36610 AACTTTAAAGGAGGATTTCCCCAGAATTTACGATTTAGAAAGGATTTTTATTGGTCCAACATGTA
66 AACTCTAAAGGAGGATTTCACCAGAATTTACGATTTACAAAGGATTTTTATTAGTCCAACATGTA
* * * *
36675 TTATTCAGTTATGAACATTGCTCTTACAAAACTCCAAAAAAGGATTTCACCGAAATTT
131 TCATTCAGTTATGAACATTGCTCATACAAAACTCCAAAAAAGGATTTCACAGAAATTC
* * *
36733 ACGGCTGACAAAAGATTTTTATTGGTCCAAGATGTATTATTCATTTATTGAACATTGCTCTTAGA
1 ACGGCTTACAAAATATTTTTATTGGTCCAACATGTATTATTCATTTA-TGAACATTGCTCTTAGA
* * *
36798 AAACTCTGAAGGAGGATTTCACCAGATTTTACGGA-TTACACAA-GATTTTTTTTAGTCCAACAT
65 AAACTCTAAAGGAGGATTTCACCAGAATTTAC-GATTTACA-AAGGATTTTTATTAGTCCAACAT
* * * * * * * *
36861 GTATCATTCATTTATGAACATTGCTCATAGAGAATTCTAAAAGAGGATTTCATAGGAATTC
128 GTATCATTCAGTTATGAACATTGCTCATACAAAACTCCAAAAAAGGATTTCACAGAAATTC
*
36922 ACGGCTTACAGAATATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATT
1 ACGGCTTACAAAATATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATT
36977 AATTGATTGA
Statistics
Matches: 210, Mismatches: 31, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
188 48 0.23
189 158 0.75
190 4 0.02
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (188 bp):
ACGGCTTACAAAATATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCTTAGAA
AACTCTAAAGGAGGATTTCACCAGAATTTACGATTTACAAAGGATTTTTATTAGTCCAACATGTA
TCATTCAGTTATGAACATTGCTCATACAAAACTCCAAAAAAGGATTTCACAGAAATTC
Found at i:37054 original size:147 final size:147
Alignment explanation
Indices: 36839--37259 Score: 637
Period size: 147 Copynumber: 2.9 Consensus size: 147
36829 CGGATTACAC
* * * * * *
36839 AAGATTTTTTTTAGTCCAACATGTATCATTCATTTATGAACATTGCTCATAGAGAA-TTCTAAAA
1 AAGATTTTTATTGGTCCAACATGTTTTATTCATTTATGAACATTGCTCTTAGAAAACTT-TAAAA
** * *
36903 GAGGATTTCATAGGAATTCACGGCTTACAGAATATTTTTATTGGTCCAACATGTATTATTCATTT
65 GAGGATTTCACCGGAATTTACGGCTTACAGAAGATTTTTATTGGTCCAACATGTATTATTCATTT
*
36968 ATGAACATTAATTGATTG
130 ACGAACATTAATTGATTG
* *
36986 AAGATTTTTATTGGTCCAACATGTTTTATTTATTTATGAACATTGCTCTTAGAAAACTTTAAAGG
1 AAGATTTTTATTGGTCCAACATGTTTTATTCATTTATGAACATTGCTCTTAGAAAACTTTAAAAG
* *
37051 AGGATTTCACCGGAATTTTCGGCTTACAGAAGACTTTTATTGGTCCAACATGTATTATTCATTTA
66 AGGATTTCACCGGAATTTACGGCTTACAGAAGATTTTTATTGGTCCAACATGTATTATTCATTTA
37116 CGAACATTAATTGATTG
131 CGAACATTAATTGATTG
* ** *
37133 AATATTTTTATTGGTCCAACATGTTTTATTCATTTGCGAACATTGCTCTTAGAAAACTCTAAAAG
1 AAGATTTTTATTGGTCCAACATGTTTTATTCATTTATGAACATTGCTCTTAGAAAACTTTAAAAG
* *
37198 AGGATTTCACCGGAATTTACGGCTTACAAAAGATTTTTATTGGTTCAACATGTATTATTCAT
66 AGGATTTCACCGGAATTTACGGCTTACAGAAGATTTTTATTGGTCCAACATGTATTATTCAT
37260 CCATGAAAAC
Statistics
Matches: 248, Mismatches: 25, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
147 246 0.99
148 2 0.01
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.40
Consensus pattern (147 bp):
AAGATTTTTATTGGTCCAACATGTTTTATTCATTTATGAACATTGCTCTTAGAAAACTTTAAAAG
AGGATTTCACCGGAATTTACGGCTTACAGAAGATTTTTATTGGTCCAACATGTATTATTCATTTA
CGAACATTAATTGATTG
Found at i:37488 original size:71 final size:71
Alignment explanation
Indices: 37357--37488 Score: 201
Period size: 71 Copynumber: 1.9 Consensus size: 71
37347 TATGGATCGC
* * * *
37357 AAAATATTTTCATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCTTATAAAACTCGTCG
1 AAAAGATTTTCATTGGTCCAACATGTATTATTCATATATGAACATTGCTATTAGAAAACTCGTCG
37422 GCTTAG
66 GCTTAG
* * *
37428 AAAAGATTTTTATTGGTCCAACATGTATTATTCATATATGGACATTGCTATTAGAGAACTC
1 AAAAGATTTTCATTGGTCCAACATGTATTATTCATATATGAACATTGCTATTAGAAAACTC
37489 TGAAAGAGGA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 54 1.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.39
Consensus pattern (71 bp):
AAAAGATTTTCATTGGTCCAACATGTATTATTCATATATGAACATTGCTATTAGAAAACTCGTCG
GCTTAG
Found at i:37739 original size:94 final size:94
Alignment explanation
Indices: 37578--37835 Score: 306
Period size: 94 Copynumber: 2.7 Consensus size: 94
37568 ATTGATTGAT
* * * * *
37578 GATTTTTATTGGTTCAACATGT-TTTATTCATTTATTAACGTTGCTCTTAGAAAACTCTAAAGGA
1 GATTTTTATTGGTCCAACATGTATTT-TTCATTTATGAACATTGCTCTTAGAGAACTCTGAAGGA
*
37642 GGATTTCCACGGAATTTA-CGCCTTA-AAATA
65 GGATTTCCACAGAATTTATCGCC-TACAAA-A
* * * *
37672 GATTTTTATTGGTCCACCATGTATTTTTAATTTATGAACTTTGCTATTAGAGAACTCTGAAGGAG
1 GATTTTTATTGGTCCAACATGTATTTTTCATTTATGAACATTGCTCTTAGAGAACTCTGAAGGAG
* *
37737 GATTTCCCCAGAATTTATGGCCTACAAAA
66 GATTTCCACAGAATTTATCGCCTACAAAA
* * * * * *
37766 GATTTTTATTGGTCCAATATGTATTATTCATCTATGAACATTGTTCTTAGGGAACTCTGAAAGAG
1 GATTTTTATTGGTCCAACATGTATTTTTCATTTATGAACATTGCTCTTAGAGAACTCTGAAGGAG
37831 GATTT
66 GATTT
37836 TAGGCTTACA
Statistics
Matches: 140, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
94 131 0.94
95 9 0.06
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (94 bp):
GATTTTTATTGGTCCAACATGTATTTTTCATTTATGAACATTGCTCTTAGAGAACTCTGAAGGAG
GATTTCCACAGAATTTATCGCCTACAAAA
Found at i:37933 original size:323 final size:326
Alignment explanation
Indices: 37428--38029 Score: 822
Period size: 323 Copynumber: 1.8 Consensus size: 326
37418 GTCGGCTTAG
*
37428 AAAAGATTTTTATTGGTCCAACATGTATTATTCATATATGGACATTGCTATTAGAGAACTCTGAA
1 AAAAGATTTTTATTGGTCCAACATGTATTATTCATATATGAACATTGCTATTAGAGAACTCTGAA
* *
37493 AGAGGATTTCACACGAATTTACGGCTTCCAGAAGATTTTTATTGGTCCAATTGTATTATTCATTT
66 AGAGGA-TT-------ATTTACGGCTTACAGAAGATTTTTATTAGTCCAATTGTATTATTCATTT
** * * *
37558 ATAAACTGTAATTGATTGATGATTTTTATTGGTTCAACATGTTTTATTCATTTATTAACGTTGCT
123 ATAAACTGTAATTGATTGAAAATTTTTATTGGTCCAACATGTTTTATTCATTTATGAACATTGCT
* *
37623 CTTAGAAAACTCTAAAGGAGGATTTC-CACGGAATTTACGCCTTA-AAATAGATTTTTAT-TGGT
188 CTTAAAAAACTCTAAAGGAGGATTTCAC-CGGAAATTACGCCTTACAAA-AGATTTTTATGT-GT
*
37685 CCACCATGTATTTTTAATTTATGAACTTTGCTATTAGAGAACTCTGAAGGAGGATTTCCCCAGAA
250 CCACCATGTATTATTAATTTATGAACTTTGCTATTAGAGAACTCTGAAGGAGGATTTCCCCAGAA
37750 TTTATGGCCTAC
315 TTTATGGCCTAC
* * * * *
37762 AAAAGATTTTTATTGGTCCAATATGTATTATTCATCTATGAACATTGTTCTTAGGGAACTCTGAA
1 AAAAGATTTTTATTGGTCCAACATGTATTATTCATATATGAACATTGCTATTAGAGAACTCTGAA
* *
37827 AGAGGA-T-TTTA-GGCTTACAGAAGATTTTTATTATTCCAATTGTATTATTCATTTATGAACAT
66 AGAGGATTATTTACGGCTTACAGAAGATTTTTATTAGTCCAATTGTATTATTCATTTATAAAC-T
* *
37889 -TAATTGATTGAAAATTTTTATTGGTCCATCATGTTTTGTTCATTTATGAACATTGCTCTTAAAA
130 GTAATTGATTGAAAATTTTTATTGGTCCAACATGTTTTATTCATTTATGAACATTGCTCTTAAAA
* * * *
37953 AACTCTGAAGGAGGATTTTACCGGAAATTACGGCTTACAAAAGATTTTTATGTGTCCAGCATGTA
195 AACTCTAAAGGAGGATTTCACCGGAAATTACGCCTTACAAAAGATTTTTATGTGTCCACCATGTA
*
38018 TTATTCATTTAT
260 TTATTAATTTAT
38030 ATGAACATTA
Statistics
Matches: 239, Mismatches: 25, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
323 163 0.68
324 10 0.04
332 1 0.00
334 65 0.27
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40
Consensus pattern (326 bp):
AAAAGATTTTTATTGGTCCAACATGTATTATTCATATATGAACATTGCTATTAGAGAACTCTGAA
AGAGGATTATTTACGGCTTACAGAAGATTTTTATTAGTCCAATTGTATTATTCATTTATAAACTG
TAATTGATTGAAAATTTTTATTGGTCCAACATGTTTTATTCATTTATGAACATTGCTCTTAAAAA
ACTCTAAAGGAGGATTTCACCGGAAATTACGCCTTACAAAAGATTTTTATGTGTCCACCATGTAT
TATTAATTTATGAACTTTGCTATTAGAGAACTCTGAAGGAGGATTTCCCCAGAATTTATGGCCTA
C
Found at i:38320 original size:96 final size:94
Alignment explanation
Indices: 38125--38354 Score: 250
Period size: 96 Copynumber: 2.4 Consensus size: 94
38115 TACGTCTAAT
* * *
38125 ATTTTTATTGGTCCAACATGTATTATTTATTTATCAACATTGCTCTTAGAAAACTCTGAAGGAGG
1 ATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCTTAGAAAACTCTGAAAGAGG
* * * *
38190 ATTTCCCCGAAATTTACGGCTTAGAATAG
66 ATTTCCACGAAACTTACGACTTACAATAG
* * * * * * *
38219 TTTTTTTTTTTCGTCCAACATGTATTATTCATTTAAGAACATTGCTTTTAGAGAACTTTGAAAGA
1 --ATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCTTAGAAAACTCTGAAAGA
* *
38284 GGATTT-CATGAGAACTTATGACTTACAGA-AG
64 GGATTTCCACGA-AACTTACGACTTACA-ATAG
*
38315 ATTTTTATTGGTCCAA-TTGTATTATTCATTTATGAACATT
1 ATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATT
38355 AATTGATTGA
Statistics
Matches: 111, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
93 22 0.20
94 13 0.12
95 3 0.03
96 72 0.65
97 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.41
Consensus pattern (94 bp):
ATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCTTAGAAAACTCTGAAAGAGG
ATTTCCACGAAACTTACGACTTACAATAG
Found at i:38373 original size:465 final size:463
Alignment explanation
Indices: 37673--38823 Score: 1468
Period size: 465 Copynumber: 2.5 Consensus size: 463
37663 CTTAAAATAG
* * * *
37673 ATTTTTATTGGTCCACCATGTATT-TTTAATTTATGAACTTTGCTATTAGAGAACTCTGAAGGAG
1 ATTTTTATTGGTCCAACATGTATTATTT-ATTTATGAACATTGCTCTTAGAAAACTCTGAAGGAG
* * * *
37737 GATTTCCCC-AGAATTTATGGCCTACAAAAG--ATTTTTATTGGTCCAATATGTATTATTCATCT
65 GATTTCCCCGA-AATTTATGGCTTA-GAAAGTTATTTTTATTGGTCCAACATGTATTATTCATTT
* *
37799 ATGAACATTGTTCTTAGGGAACTCTGAAAGAGGATTT--T-AG-----GCTTACAGAAGATTTTT
128 ATGAACATTGTTCTTAGAGAACTTTGAAAGAGGATTTCATGAGAATTAGCTTACAGAAGATTTTT
** *
37856 ATTATTCCAATTGTATTATTCATTTATGAACATTAATTGATTGAAAATTTTTATTGGTCCATCAT
193 ATTGGTCCAATTGTATTATTCATTTATGAACATTAATTGATTGAAAATTTTTATTGGTCCAACAT
* * *
37921 GTTTTGTTCATTTATGAAC-ATTGCTCTTAAAAAACTCTGAAGGAGGATTTTACCGGAAATTACG
258 GTTTTATTCATTTATGAACAATT-CTCTTAAAAAACTCTGAAGGAGGATTTCACCAGAAATTACG
*
37985 GCTTACAAAAGATTTTTATGTG-TCCAGCATG-TATTATTCATTTATATGAACATTAATTGAATT
322 GCTTACAAAAGATTTTTAT-TGATCCAACATGTTATTATTCA-TT-TATGAACATTAATTGAATT
* *
38048 GGGCTCGAGTCCTATATAAATAAGAGAATTCTTA-TAGCTCTTAAAAAACTTTAATTTCACTGGA
384 GGGCTCGAGTCCCATATAAATAAGAGAATCCTTACT-GCTCTTAAAAAACTTTAATTTCACTGGA
*
38112 ATTTACG-T-C-TAAT
448 ATTTACGATACAAAAT
*
38125 ATTTTTATTGGTCCAACATGTATTATTTATTTATCAACATTGCTCTTAGAAAACTCTGAAGGAGG
1 ATTTTTATTGGTCCAACATGTATTATTTATTTATGAACATTGCTCTTAGAAAACTCTGAAGGAGG
* * * * *
38190 ATTTCCCCGAAATTTACGGCTTAGAATAGTTTTTTTTTTTCGTCCAACATGTATTATTCATTTAA
66 ATTTCCCCGAAATTTATGGCTTAGAA-AGTTATTTTTATTGGTCCAACATGTATTATTCATTTAT
38255 GAACATTGCTT-TTAGAGAACTTTGAAAGAGGATTTCATGAGAACTTATGACTTACAGAAGATTT
130 GAACATTG-TTCTTAGAGAACTTTGAAAGAGGATTTCATGAGAA-TTA-G-CTTACAGAAGATTT
* *
38319 TTATTGGTCCAATTGTATTATTCATTTATGAACATTAATTGATTGAAGATTTTTATTGGTTCAAC
191 TTATTGGTCCAATTGTATTATTCATTTATGAACATTAATTGATTGAAAATTTTTATTGGTCCAAC
* * * *
38384 ATGTTTTATTCATTTATGAACAATTCTCTTAGAAAGCTCTGAAGGAGGATTTCACCAGAATTTAT
256 ATGTTTTATTCATTTATGAACAATTCTCTTAAAAAACTCTGAAGGAGGATTTCACCAGAAATTAC
*
38449 GGCTTACAAAAGATTTTTATTGATCCAACATGTTATTATTTATTTATGAACATTAATTGAATTGG
321 GGCTTACAAAAGATTTTTATTGATCCAACATGTTATTATTCATTTATGAACATTAATTGAATTGG
* *
38514 GTTCGAGTCCCATATAAATATGAGAATCCTTACTGCTCTTAAAAAACTTTAATTTCACTGGAATT
386 GCTCGAGTCCCATATAAATAAGAGAATCCTTACTGCTCTTAAAAAACTTTAATTTCACTGGAATT
38579 TACGACTCACAAAAT
451 TACGA-T-ACAAAAT
* * * * * * *
38594 ATTTTTATTGGTCCAACATGTATTATTCATTCATGAAAATTGCTCTTAGAATACTGTCAACGAGG
1 ATTTTTATTGGTCCAACATGTATTATTTATTTATGAACATTGCTCTTAGAAAACTCTGAAGGAGG
* * *
38659 ATTTGCCCGGAATTTATGGCTTAGAAA-TTATTTTTATTGGTCCAACATGTATTATTCAGTTATG
66 ATTTCCCCGAAATTTATGGCTTAGAAAGTTATTTTTATTGGTCCAACATGTATTATTCATTTATG
* * * * *
38723 AACATTGTTTCTTACTAG-ACTTTG-AAGAGGGATTTCACCG-GAATTCACGGCTCACAAAATAT
131 AACATTG-TTCTTA-GAGAACTTTGAAAGA-GGATTTCA-TGAGAATT-A--GCTTACAGAAGAT
*
38785 TTTTATTGGTCCAACATGTATTATTCATTTATGAACATT
189 TTTTATTGGTCCAA-TTGTATTATTCATTTATGAACATT
38824 GCTCTTAGAA
Statistics
Matches: 607, Mismatches: 59, Indels: 49
0.85 0.08 0.07
Matches are distributed among these distances:
451 2 0.00
452 77 0.13
453 4 0.01
454 58 0.10
455 2 0.00
456 1 0.00
457 2 0.00
464 87 0.14
465 159 0.26
466 12 0.02
467 47 0.08
468 46 0.08
469 110 0.18
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.40
Consensus pattern (463 bp):
ATTTTTATTGGTCCAACATGTATTATTTATTTATGAACATTGCTCTTAGAAAACTCTGAAGGAGG
ATTTCCCCGAAATTTATGGCTTAGAAAGTTATTTTTATTGGTCCAACATGTATTATTCATTTATG
AACATTGTTCTTAGAGAACTTTGAAAGAGGATTTCATGAGAATTAGCTTACAGAAGATTTTTATT
GGTCCAATTGTATTATTCATTTATGAACATTAATTGATTGAAAATTTTTATTGGTCCAACATGTT
TTATTCATTTATGAACAATTCTCTTAAAAAACTCTGAAGGAGGATTTCACCAGAAATTACGGCTT
ACAAAAGATTTTTATTGATCCAACATGTTATTATTCATTTATGAACATTAATTGAATTGGGCTCG
AGTCCCATATAAATAAGAGAATCCTTACTGCTCTTAAAAAACTTTAATTTCACTGGAATTTACGA
TACAAAAT
Found at i:38885 original size:189 final size:188
Alignment explanation
Indices: 38565--38910 Score: 509
Period size: 189 Copynumber: 1.8 Consensus size: 188
38555 AAAAACTTTA
* *
38565 ATTTCACTGGAATTTACGACTCACAAAATATTTTTATTGGTCCAACATGTATTATTCATTCATGA
1 ATTTCACCGGAATTCACGACTCACAAAATATTTTTATTGGTCCAACATGTATTATTCATTCATGA
* * * *
38630 AAATTGCTCTTAGAATACTGTCAACGAGGATTTGCCCGGAATTTATGGCTTAGAAATTATTTTTA
66 AAATTGCTCTTAGAATACTG-CAAAGAGGATTTGCCCGGAATTTACGGCTTACAAATGATTTTTA
*
38695 TTGGTCCAACATGTATTATTCAGTTATGAACATTGTTTCTTACTAGACTTTGAAGAGGG
130 TTGGTCCAACATGAATTATTCAGTTATGAACATTGTTTCTTACTAGACTTTGAAGAGGG
* *
38754 ATTTCACCGGAATTCACGGCTCACAAAATATTTTTATTGGTCCAACATGTATTATTCATTTATGA
1 ATTTCACCGGAATTCACGACTCACAAAATATTTTTATTGGTCCAACATGTATTATTCATTCATGA
* * *
38819 ACATTGCTCTTAGAAATTTCTG-AAAGAGGATTT-CACCGGAATTTGCGGCTTACACAA-GATTT
66 AAATTGCTCTTAG-AA-TACTGCAAAGAGGATTTGC-CCGGAATTTACGGCTTACA-AATGATTT
*
38881 TTATTGGTCCAACATGAATTATTCATTTAT
127 TTATTGGTCCAACATGAATTATTCAGTTAT
38911 AAATATTAAT
Statistics
Matches: 140, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
188 1 0.01
189 131 0.94
190 4 0.03
191 4 0.03
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (188 bp):
ATTTCACCGGAATTCACGACTCACAAAATATTTTTATTGGTCCAACATGTATTATTCATTCATGA
AAATTGCTCTTAGAATACTGCAAAGAGGATTTGCCCGGAATTTACGGCTTACAAATGATTTTTAT
TGGTCCAACATGAATTATTCAGTTATGAACATTGTTTCTTACTAGACTTTGAAGAGGG
Found at i:38908 original size:94 final size:93
Alignment explanation
Indices: 38565--38910 Score: 412
Period size: 94 Copynumber: 3.7 Consensus size: 93
38555 AAAAACTTTA
* * *
38565 ATTTCACTGGAATTTACGACTCACAAAATATTTTTATTGGTCCAACATGTATTATTCATTCATGA
1 ATTTCACCGGAATTTACGGCTCACAAAATATTTTTATTGGTCCAACATGTATTATTCATTTATGA
* * *
38630 AAATTGCTCTTAG-AATACTGTCAACGAGG
66 ACATTGCTCTTAGAAATTCTG--AAAGAGG
* * * * *
38659 ATTTGC-CCGGAATTTATGGCTTAGAAATTATTTTTATTGGTCCAACATGTATTATTCAGTTATG
1 ATTT-CACCGGAATTTACGGCTCACAAAATATTTTTATTGGTCCAACATGTATTATTCATTTATG
* * *
38723 AACATTGTTTCTTACTAGACTT-TG-AAGAGGG
65 AACATTG-CTCTTA-GA-AATTCTGAAAGA-GG
*
38754 ATTTCACCGGAATTCACGGCTCACAAAATATTTTTATTGGTCCAACATGTATTATTCATTTATGA
1 ATTTCACCGGAATTTACGGCTCACAAAATATTTTTATTGGTCCAACATGTATTATTCATTTATGA
38819 ACATTGCTCTTAGAAATTTCTGAAAGAGG
66 ACATTGCTCTTAGAAA-TTCTGAAAGAGG
* * * * *
38848 ATTTCACCGGAATTTGCGGCTTACACAAGATTTTTATTGGTCCAACATGAATTATTCATTTAT
1 ATTTCACCGGAATTTACGGCTCACAAAATATTTTTATTGGTCCAACATGTATTATTCATTTAT
38911 AAATATTAAT
Statistics
Matches: 213, Mismatches: 29, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
92 1 0.00
93 3 0.01
94 130 0.61
95 75 0.35
97 2 0.01
98 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (93 bp):
ATTTCACCGGAATTTACGGCTCACAAAATATTTTTATTGGTCCAACATGTATTATTCATTTATGA
ACATTGCTCTTAGAAATTCTGAAAGAGG
Found at i:39099 original size:94 final size:94
Alignment explanation
Indices: 38989--39235 Score: 280
Period size: 94 Copynumber: 2.6 Consensus size: 94
38979 ATTTCCCTAT
* * * * **
38989 AATTTACGGCTCACAAAATATTTTTATTGGTCAAACACGTATTATTCATTTATGAACATTTCTTG
1 AATTTACGGCTTACAAAATATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCC
** * * *
39054 TAGAAAACTTTGAAGGAGGATTTCACCGG
66 TAGAAAACACTAAAAGAGGATTTCACAGG
* * * * * *
39083 AATTTACGGTTTACAAAAGATTTTTATTCGTCCAACATGTATGAGTCATTTATGAATATTGCTCC
1 AATTTACGGCTTACAAAATATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCC
**
39148 TAGAGGACACTAAAAGAGGATTTCACAGG
66 TAGAAAACACTAAAAGAGGATTTCACAGG
* * *
39177 AATTTACGGCTTAC-ATATGATTTTTATTGGTCCAACATGTATTATTTATTTATAAACAT
1 AATTTACGGCTTACAAAAT-ATTTTTATTGGTCCAACATGTATTATTCATTTATGAACAT
39236 GAATTGATTG
Statistics
Matches: 124, Mismatches: 28, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
93 2 0.02
94 122 0.98
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.37
Consensus pattern (94 bp):
AATTTACGGCTTACAAAATATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCC
TAGAAAACACTAAAAGAGGATTTCACAGG
Found at i:39118 original size:319 final size:319
Alignment explanation
Indices: 38669--39245 Score: 802
Period size: 319 Copynumber: 1.8 Consensus size: 319
38659 ATTTGCCCGG
* * * * * *
38669 AATTTATGGCTTAGAAATTATTTTTATTGGTCCAACATGTATTATTCAGTTATGAACATTGTTTC
1 AATTTACGGCTCACAAAATATTTTTATTGGTCAAACACGTATTATTCAGTTATGAACATTGTTTC
* * * * *
38734 TTACTAGACTTTGAAGAGGGATTTCACCGGAATTCACGGCTCACAAAATATTTTTATTGGTCCAA
66 GTACAAAACTTTGAAGAGGGATTTCACCGGAATTCACGGCTCACAAAAGATTTTTATTCGTCCAA
* * * ** * *
38799 CATGTATTATTCATTTATGAACATTGCTCTTAGA-AATTTCTGAAAGAGGATTTCACCGGAATTT
131 CATGTATGAGTCATTTATGAACATTGCTCCTAGAGAA-CACTAAAAGAGGATTTCACAGGAATTT
* * *
38863 GCGGCTTACACAAGATTTTTATTGGTCCAACATGAATTATTCATTTATAAATATTAATTGGATTG
195 ACGGCTTACACAAGATTTTTATTGGTCCAACATGAATTATTCATTTATAAACATGAATT-GATTG
38928 GTGTCGAGTCCCATAAAGATAAGAGAATCCTTACAGCTTTTAAAAAATTTAATTTCCCTAT
259 GTGTCGAGTCCCATAAAGATAAGAGAATCCTTACAGCTTTTAAAAAATTTAATTTCCCTAT
*
38989 AATTTACGGCTCACAAAATATTTTTATTGGTCAAACACGTATTATTCATTTATGAACATT-TCTT
1 AATTTACGGCTCACAAAATATTTTTATTGGTCAAACACGTATTATTCAGTTATGAACATTGT-TT
* * * *
39053 -GTAGAAAACTTTGAAG-GAGGATTTCACCGGAATTTACGGTTTACAAAAGATTTTTATTCGTCC
65 CGTACAAAACTTTGAAGAG-GGATTTCACCGGAATTCACGGCTCACAAAAGATTTTTATTCGTCC
* *
39116 AACATGTATGAGTCATTTATGAATATTGCTCCTAGAGGACACTAAAAGAGGATTTCACAGGAATT
129 AACATGTATGAGTCATTTATGAACATTGCTCCTAGAGAACACTAAAAGAGGATTTCACAGGAATT
* * * *
39181 TACGGCTTACATATGATTTTTATTGGTCCAACATGTATTATTTATTTATAAACATGAATTGATTG
194 TACGGCTTACACAAGATTTTTATTGGTCCAACATGAATTATTCATTTATAAACATGAATTGATTG
39246 AAGATTTTCA
Statistics
Matches: 222, Mismatches: 32, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
318 6 0.03
319 160 0.72
320 56 0.25
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (319 bp):
AATTTACGGCTCACAAAATATTTTTATTGGTCAAACACGTATTATTCAGTTATGAACATTGTTTC
GTACAAAACTTTGAAGAGGGATTTCACCGGAATTCACGGCTCACAAAAGATTTTTATTCGTCCAA
CATGTATGAGTCATTTATGAACATTGCTCCTAGAGAACACTAAAAGAGGATTTCACAGGAATTTA
CGGCTTACACAAGATTTTTATTGGTCCAACATGAATTATTCATTTATAAACATGAATTGATTGGT
GTCGAGTCCCATAAAGATAAGAGAATCCTTACAGCTTTTAAAAAATTTAATTTCCCTAT
Found at i:39366 original size:147 final size:147
Alignment explanation
Indices: 39128--39536 Score: 536
Period size: 147 Copynumber: 2.8 Consensus size: 147
39118 CATGTATGAG
* * **
39128 TCATTTATGAATATTGCTCCTAGAGGAC-ACTAAAAGAGGATTTCA-CAGGAATTTACGGCTTAC
1 TCATTTATGAACATTGCTCTTAGAAAACTA-TAAAAGAGGATTTCACCA-GAATTTACGGCTTAC
* * * * *
39191 ATATGATTTTTATTGGTCCAACATGTATTATTTATTTATAAACATGAATTGATTGAAGATTTTCA
64 AAAAGATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATTAATTGATTGAAGATTTTCA
39256 TTGGTACAAAATGTTTTAT
129 TTGGTACAAAATGTTTTAT
* * *
39275 TTATTTATGAACATTGCT-TTGAGAAAACTATAAAATAGGATTTCACCAGAATTTTCGGCTTACA
1 TCATTTATGAACATTGCTCTT-AGAAAACTATAAAAGAGGATTTCACCAGAATTTACGGCTTACA
* * * * *
39339 GAAGATTTCTATTGGTCCAACATGTATTGTTCATTTATGAACATTAATTGATTGAAGTTTTTTAT
65 AAAGATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATTAATTGATTGAAGATTTTCAT
* *
39404 TGGTCCAACATGTTTTAT
130 TGGTACAAAATGTTTTAT
* * * * *
39422 TCATTTATGAACATTGCTCTTAGAAAACTCTGAAGGAGGATTTCACCGGAATATACGGCTTACAA
1 TCATTTATGAACATTGCTCTTAGAAAACTATAAAAGAGGATTTCACCAGAATTTACGGCTTACAA
* *
39487 AAGATTTTTATTGGTCGAACATGTATTATTCATTCATGAACATTAATTGA
66 AAGATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATTAATTGA
39537 ATTCAGTTCG
Statistics
Matches: 227, Mismatches: 31, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
146 1 0.00
147 221 0.97
148 5 0.02
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.39
Consensus pattern (147 bp):
TCATTTATGAACATTGCTCTTAGAAAACTATAAAAGAGGATTTCACCAGAATTTACGGCTTACAA
AAGATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATTAATTGATTGAAGATTTTCATT
GGTACAAAATGTTTTAT
Found at i:39830 original size:95 final size:93
Alignment explanation
Indices: 39605--39941 Score: 404
Period size: 95 Copynumber: 3.5 Consensus size: 93
39595 ACTGGAAATA
* * * * *
39605 TACGGCTCACAAAATAATTTTATTGGTCCAACATGTATAATTCATTTATGAACATTGCTCTTAGA
1 TACGGCTTACAAAAGATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCTTAAA
** *
39670 AAACTTTGAAGGAGGATTTCCCCAGAATT
66 AAACTCCGAAGGAGGATTTCACC-GAATT
* * * *
39699 TATGGCTTAGAAAGGATTTTTATTGGTCCAACATGTATTATTCAGTTATGAACATTGCTCTTACA
1 TACGGCTTACAAAAGATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCTTA-A
*
39764 AAAACTCCGAAGAAGGATTTCACCGAAGTT
65 AAAACTCCGAAGGAGGATTTCACCGAA-TT
* * * * * *
39794 TACGGCTGACAAAAGATTTTTATTGGTCTAACATGTATTATTCATTTATAAACGTTGCACTTGGA
1 TACGGCTTACAAAAGATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCTT-AA
39859 AAAACTCCGAAGGAGGATTTCACCGAAATT
65 AAAACTCCGAAGGAGGATTTCACCG-AATT
* * *
39889 TACGGCTTACACAAGATTTTTTTTTTTAGTCCAACATGTATTATTCATTTATG
1 TACGGCTTACAAAAGA---TTTTTATTGGTCCAACATGTATTATTCATTTATG
39942 GGTAAAAGTA
Statistics
Matches: 206, Mismatches: 30, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
94 58 0.28
95 116 0.56
96 2 0.01
98 30 0.15
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (93 bp):
TACGGCTTACAAAAGATTTTTATTGGTCCAACATGTATTATTCATTTATGAACATTGCTCTTAAA
AAACTCCGAAGGAGGATTTCACCGAATT
Done.