Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018080.1 Corchorus olitorius cultivar O-4 contig18113, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3468
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30


Found at i:907 original size:13 final size:13

Alignment explanation


    Indices: 865--909  Score: 56
    Period size: 12  Copynumber: 3.5  Consensus size: 13

        855 TCATGCACCC

                        * 
        865 AAAACAATTTATTT
          1 AAAACAATTTA-AT

                 *       
        879 AAAACCATTT-AT
          1 AAAACAATTTAAT

                         
        891 AAAACAATTTAAT
          1 AAAACAATTTAAT

                  
        904 AAAACA
          1 AAAACA

        910 GTAATAAAAT


Statistics
Matches: 27,  Mismatches: 3, Indels: 3
        0.82            0.09        0.09

Matches are distributed among these distances:
  12   10  0.37
  13    8  0.30
  14    9  0.33

ACGTcount: A:0.58, C:0.11, G:0.00, T:0.31


Consensus pattern (13 bp):   
AAAACAATTTAAT

Found at i:2022 original size:19 final size:20

Alignment explanation


    Indices: 1998--2036  Score: 55
    Period size: 19  Copynumber: 2.0  Consensus size: 20

       1988 AAAATTCTTA

                                 
       1998 TTTTCTT-TATTTC-TCTTTT
          1 TTTTCTTCT-TTTCTTCTTTT

                                
       2017 TTTTCTTCTTTTCTTCTTTT
          1 TTTTCTTCTTTTCTTCTTTT

       2037 GGGCCAGGCC


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  19   11  0.61
  20    7  0.39

ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79


Consensus pattern (20 bp):   
TTTTCTTCTTTTCTTCTTTT
Done.