Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018081.1 Corchorus olitorius cultivar O-4 contig18114, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17907

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
818--854
18
2.1
18
89
0
56
45
10
0
43
1.39
1355--1417
6
10.0
6
91
8
99
47
0
15
36
1.46
1355--1419
19
3.4
19
93
6
114
47
0
15
36
1.46
1355--1417
25
2.5
25
97
2
117
47
0
15
36
1.46
8003--8039
17
2.2
17
100
0
74
35
10
5
48
1.61
8317--8527
106
2.0
108
86
1
300
43
21
15
19
1.88
8591--8618
13
2.2
13
100
0
56
32
28
21
17
1.96
12716--12760
22
2.0
23
91
4
74
46
8
15
28
1.76
13845--13928
31
2.7
32
79
7
91
35
23
5
34
1.80
13868--13928
32
1.9
31
86
3
86
36
24
4
34
1.77
14430--14459
15
1.9
16
93
6
53
50
13
13
23
1.77
17279--17524
122
2.0
127
88
6
376
36
11
1
49
1.49

Tables:   1

The End!