Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018084.1 Corchorus olitorius cultivar O-4 contig18117, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3917
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.34


Found at i:1414 original size:13 final size:12

Alignment explanation


    Indices: 1396--1440  Score: 54
    Period size: 13  Copynumber: 3.5  Consensus size: 12

       1386 ATTTTATTAC

                         
       1396 TGTTTTATTAAAT
          1 TGTTTTA-TAAAT

                        
       1409 TGTTTTATAAAT
          1 TGTTTTATAAAT

            *             
       1421 GGTTTTTAATAAAT
          1 TG-TTTT-ATAAAT

                  
       1435 TGTTTT
          1 TGTTTT

       1441 GGGTGCATGA


Statistics
Matches: 28,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  12    6  0.21
  13   15  0.54
  14    7  0.25

ACGTcount: A:0.29, C:0.00, G:0.11, T:0.60


Consensus pattern (12 bp):   
TGTTTTATAAAT

Found at i:1434 original size:14 final size:14

Alignment explanation


    Indices: 1398--1440  Score: 54
    Period size: 14  Copynumber: 3.2  Consensus size: 14

       1388 TTTATTACTG

                 *        
       1398 TTTTATTAAATTG-
          1 TTTTAATAAATTGT

                       *  
       1411 TTTT-ATAAATGGT
          1 TTTTAATAAATTGT

                          
       1424 TTTTAATAAATTGT
          1 TTTTAATAAATTGT

               
       1438 TTT
          1 TTT

       1441 GGGTGCATGA


Statistics
Matches: 25,  Mismatches: 3, Indels: 3
        0.81            0.10        0.10

Matches are distributed among these distances:
  12    6  0.24
  13    8  0.32
  14   11  0.44

ACGTcount: A:0.30, C:0.00, G:0.09, T:0.60


Consensus pattern (14 bp):   
TTTTAATAAATTGT
Done.