Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018086.1 Corchorus olitorius cultivar O-4 contig18119, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59625

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
400--471
2
33.0
2
84
15
90
45
0
8
45
1.33
400--471
7
11.0
6
89
10
90
45
0
8
45
1.33
400--471
14
5.5
13
90
9
103
45
0
8
45
1.33
6740--6846
2
48.5
2
76
20
81
43
0
11
43
1.46
6740--6846
12
8.2
13
78
15
107
43
0
11
43
1.46
6740--6846
40
2.6
43
78
15
136
43
0
11
43
1.46
6752--6858
52
2.1
52
92
7
182
42
1
13
42
1.54
7714--7760
23
2.0
24
87
4
69
48
25
10
14
1.76
8094--8125
5
6.8
5
96
3
50
0
0
12
87
0.54
8665--8703
16
2.5
16
91
4
62
43
15
0
41
1.46
10973--11027
26
2.2
25
83
3
65
27
7
16
49
1.72
11317--11507
74
2.5
77
86
5
264
35
14
9
39
1.80
13017--13107
35
2.5
37
87
3
123
51
9
7
30
1.63
14418--14507
45
2.0
45
93
0
153
46
13
11
28
1.77
20522--20562
21
2.0
21
85
9
57
17
24
14
43
1.86
24809--24875
35
1.9
35
93
0
116
35
8
14
40
1.78
25515--25539
12
2.1
12
100
0
50
32
8
44
16
1.76
31290--31344
28
2.0
28
100
0
110
38
29
10
21
1.88
31695--31721
14
1.9
14
100
0
54
0
14
0
85
0.61
33096--33140
13
3.3
13
84
6
54
8
8
2
80
1.00
33256--33329
29
2.5
29
82
4
76
33
14
10
40
1.81
33278--33334
29
2.0
29
86
3
80
28
14
14
43
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33478--33538
31
2.0
31
93
0
104
42
9
18
29
1.82
45138--45215
30
2.6
30
80
11
97
28
23
20
28
1.99
46764--46804
2
20.5
2
100
0
82
51
0
0
48
1.00
49231--49260
15
2.0
15
100
0
60
40
20
13
26
1.89
49640--49684
22
2.0
23
82
8
56
42
8
15
33
1.78
55444--55759
33
9.6
32
86
7
429
10
37
21
30
1.88
58087--58125
2
20.5
2
89
10
64
51
0
0
48
1.00
58440--58504
28
2.3
27
85
15
80
43
7
1
47
1.41
58825--59119
22
13.5
21
70
15
127
37
9
15
36
1.80
58997--59103
45
2.4
44
87
4
144
35
12
14
38
1.83
59214--59280
22
3.2
20
81
12
80
41
4
8
44
1.56
59536--59562
12
2.2
12
100
0
54
51
0
0
48
1.00

Tables:   1

The End!