Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018087.1 Corchorus olitorius cultivar O-4 contig18120, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13641

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
355--393
16
2.4
16
86
0
60
7
5
30
56
1.49
424--480
25
2.4
25
88
5
82
31
5
3
59
1.36
2221--2261
3
13.7
3
84
0
55
24
0
2
73
0.96
3866--3917
25
2.1
25
100
0
104
40
0
19
40
1.51
4322--4460
68
2.0
68
97
0
260
31
15
13
38
1.87
6029--6068
5
8.6
5
91
5
50
0
0
12
87
0.54
8905--8944
2
20.0
2
100
0
80
50
0
0
50
1.00
9244--9280
16
2.1
18
85
14
51
70
5
0
24
1.08
9252--9284
16
2.1
16
100
0
66
69
6
0
24
1.10

Tables:   1

The End!