Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018088.1 Corchorus olitorius cultivar O-4 contig18121, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28208

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5097--5162
32
2.1
32
88
5
98
57
1
18
22
1.48
5177--5322
27
5.9
26
70
19
98
64
1
6
27
1.27
5185--5386
4
52.8
4
66
15
97
65
0
6
26
1.24
5214--5365
19
8.3
19
69
19
92
65
0
7
26
1.18
5171--5380
46
4.6
46
89
5
277
65
0
7
26
1.25
5097--5366
8
34.2
8
69
14
89
62
1
10
25
1.36
5235--5381
19
8.4
17
73
17
74
65
0
7
27
1.19
5723--5764
21
2.0
21
85
0
57
59
7
0
33
1.25
9018--9063
19
2.5
18
83
13
58
23
4
0
71
1.03
10950--11013
23
2.7
23
81
18
69
56
0
1
42
1.09
10949--11010
22
2.6
23
82
17
74
56
0
1
41
1.09
14899--14928
12
2.5
12
94
0
51
70
0
0
30
0.88
17200--17226
2
13.5
2
100
0
54
48
0
0
51
1.00
20388--20460
36
2.0
36
97
0
137
39
13
13
32
1.84
25285--25353
36
1.9
35
91
2
111
62
7
8
21
1.48
25806--26151
181
1.9
181
94
0
611
41
7
13
38
1.72
27773--27951
95
1.9
95
94
2
315
24
17
12
46
1.82

Tables:   1

The End!