Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018093.1 Corchorus olitorius cultivar O-4 contig18126, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4206
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:2052 original size:26 final size:26

Alignment explanation


    Indices: 2023--2074  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       2013 TGTTTTGGAT

                                      
       2023 TGTTTTTGATTGATCATATATTATTC
          1 TGTTTTTGATTGATCATATATTATTC

                                      
       2049 TGTTTTTGATTGATCATATATTATTC
          1 TGTTTTTGATTGATCATATATTATTC

       2075 CCCAATTTTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.23, C:0.08, G:0.12, T:0.58


Consensus pattern (26 bp):   
TGTTTTTGATTGATCATATATTATTC

Done.