Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018095.1 Corchorus olitorius cultivar O-4 contig18128, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14040

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
725--793
29
2.3
31
87
9
99
37
23
18
20
1.94
745--813
29
2.3
29
85
5
84
42
21
17
18
1.90
2761--2831
24
3.0
24
89
0
97
21
7
29
42
1.79
4353--4547
96
2.0
96
96
0
363
31
15
11
42
1.82
6105--6168
33
2.0
32
84
3
83
73
3
7
15
1.19
6985--7053
22
3.2
21
72
13
59
40
13
13
33
1.82
7147--7473
22
14.6
22
67
13
87
34
10
18
36
1.85
7352--7495
66
2.2
67
80
6
159
32
11
16
39
1.84
7252--7475
44
5.1
43
71
12
141
31
11
17
39
1.85
7252--7475
88
2.5
89
76
9
235
31
11
17
39
1.85
7416--7495
22
3.6
22
81
8
90
32
10
17
40
1.83
7402--7496
44
2.2
43
80
3
100
32
11
15
40
1.84
7352--7496
22
6.6
21
72
10
85
32
11
16
39
1.85
8312--8339
14
2.0
14
100
0
56
71
28
0
0
0.86
8543--8587
2
22.0
2
95
4
81
48
2
0
48
1.13
9801--9844
20
2.2
20
95
0
79
45
11
0
43
1.40
9863--9910
13
3.9
12
76
13
53
66
6
0
27
1.15
9860--9910
23
2.2
23
89
6
77
68
5
0
25
1.12
13192--13651
22
20.5
22
69
11
191
37
12
14
35
1.84

Tables:   1

The End!