Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018096.1 Corchorus olitorius cultivar O-4 contig18129, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39557

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1323--1397
22
3.4
23
81
7
102
42
9
10
37
1.72
1454--1481
2
14.0
2
100
0
56
50
0
0
50
1.00
3890--3930
21
1.9
22
85
5
57
26
12
12
48
1.75
6559--6729
84
2.0
84
97
0
324
29
16
17
36
1.92
6807--6844
11
3.5
11
85
10
51
57
2
0
39
1.12
15791--15928
31
4.5
30
77
3
107
47
16
17
18
1.84
15853--15929
29
2.6
30
83
4
93
49
15
15
19
1.80
15790--15929
60
2.3
62
85
4
178
46
16
17
19
1.84
15949--16000
22
2.4
22
87
6
70
46
11
7
34
1.69
24056--24136
42
1.9
42
92
0
135
45
16
7
30
1.74
24202--24312
56
2.0
57
94
1
197
37
1
26
34
1.67
28418--28494
31
2.5
31
80
0
91
29
15
18
36
1.92
28513--28589
31
2.5
31
81
8
77
37
15
16
29
1.90
29502--29597
47
2.2
43
81
15
131
22
10
30
36
1.88
29512--29607
47
2.0
47
100
0
192
22
8
30
38
1.84
29689--29762
37
2.0
37
100
0
148
37
16
16
29
1.90
29659--29922
108
2.6
101
86
8
367
31
16
18
33
1.93
29786--29860
38
2.0
38
100
0
150
45
10
14
29
1.79
30676--30876
47
4.0
47
75
17
215
31
17
14
36
1.90
36909--37238
62
5.3
62
88
6
282
36
15
14
33
1.88
36909--37271
90
3.8
93
81
13
381
36
15
15
33
1.89
36878--37215
152
2.2
151
90
2
532
36
15
15
33
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36943--37271
62
5.3
62
88
6
403
36
15
15
32
1.89

Tables:   1

The End!