Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018099.1 Corchorus olitorius cultivar O-4 contig18132, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64816

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3336--3365
14
2.1
14
100
0
60
60
6
13
20
1.55
7971--9093
377
2.9
382
95
1
2049
29
11
16
42
1.83
10560--10595
17
2.1
17
94
0
63
2
0
19
77
0.88
11341--11395
3
18.3
3
100
0
110
67
0
0
32
0.91
11746--11777
16
2.0
16
100
0
64
25
6
6
62
1.42
11750--11785
16
2.2
16
90
0
54
27
8
2
61
1.39
12742--13022
34
8.2
33
80
7
267
29
14
19
36
1.92
12737--12927
104
1.8
104
89
2
303
30
13
19
36
1.90
12739--13015
138
2.0
137
82
8
341
29
14
19
36
1.92
15595--15630
17
2.1
17
100
0
72
25
22
25
27
2.00
16268--16474
104
2.0
104
98
0
396
26
7
28
37
1.84
21027--21084
24
2.4
23
83
11
71
32
10
18
37
1.85
30933--31010
3
26.0
3
100
0
156
66
0
0
33
0.92
32509--33021
256
2.0
255
95
0
918
38
22
11
27
1.88
33698--33727
15
2.0
15
100
0
60
53
13
6
26
1.64
37283--37325
20
2.2
20
83
8
52
39
4
2
53
1.34
38583--38633
24
2.2
23
86
10
68
39
9
3
47
1.55
40402--40479
29
2.7
29
86
7
97
28
14
12
44
1.81
40654--40685
13
2.5
13
100
0
64
37
6
0
56
1.25
40639--40685
13
3.9
12
76
18
53
42
6
0
51
1.27
40930--40954
3
8.3
3
100
0
50
0
32
0
68
0.90
41136--41210
30
2.5
31
88
2
107
45
12
20
22
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43734--43810
30
2.6
29
83
4
82
11
7
35
45
1.70
55287--55330
20
2.1
21
83
4
54
54
20
15
9
1.68
58816--58878
27
2.3
27
86
8
83
38
11
11
39
1.76
58960--59106
49
3.0
49
88
0
213
29
25
14
30
1.95
63782--63852
21
3.4
21
94
3
117
28
18
26
26
1.98

Tables:   1

The End!