Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001810.1 Corchorus olitorius cultivar O-4 contig01810, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6729
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34


Found at i:570 original size:2 final size:2

Alignment explanation


    Indices: 563--596  Score: 50
    Period size: 2  Copynumber: 16.5  Consensus size: 2

        553 CTAAAACTAG

                                              *               
        563 TA TA TA TA TA TA TA TA TA TA TA TT TA GTA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA T

        597 GAACGAAATC


Statistics
Matches: 29,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
   2   27  0.93
   3    2  0.07

ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53


Consensus pattern (2 bp):   
TA

Found at i:4715 original size:11 final size:11

Alignment explanation


    Indices: 4699--4726  Score: 56
    Period size: 11  Copynumber: 2.5  Consensus size: 11

       4689 GAAATTTGAT

                       
       4699 ATATATATATA
          1 ATATATATATA

                       
       4710 ATATATATATA
          1 ATATATATATA

                  
       4721 ATATAT
          1 ATATAT

       4727 TCATTGGTAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   17  1.00

ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46


Consensus pattern (11 bp):   
ATATATATATA
Done.