Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018103.1 Corchorus olitorius cultivar O-4 contig18136, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67129

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1807--1833
14
1.9
14
100
0
54
25
0
7
66
1.17
3268--3315
19
2.5
19
82
3
60
6
10
2
81
0.95
4622--4657
19
1.9
19
88
5
56
66
0
0
33
0.92
5853--5882
10
3.0
10
95
0
51
13
0
0
86
0.57
5854--5883
15
2.1
14
93
6
51
10
0
0
90
0.47
9879--9973
39
2.4
39
100
0
190
34
12
22
30
1.91
12520--12558
11
3.7
11
83
13
55
2
20
0
76
0.90
12737--12762
3
8.7
3
100
0
52
30
0
0
69
0.89
20381--20408
14
2.0
14
100
0
56
35
14
7
42
1.73
23626--23671
21
2.2
21
92
0
74
32
28
8
30
1.87
27815--27888
27
2.7
27
87
0
94
17
16
28
37
1.91
30536--30634
41
2.4
41
81
3
110
23
14
16
46
1.83
31852--31994
35
3.9
35
70
18
112
37
18
18
25
1.94
31959--32295
53
6.4
53
84
6
463
37
13
18
30
1.90
35997--36899
40
22.7
41
78
9
727
17
26
19
36
1.94
35990--36899
81
11.4
81
80
8
777
17
26
19
36
1.94
36913--37060
49
3.0
49
86
8
178
21
27
15
35
1.94
43830--43884
24
2.4
24
85
8
71
43
0
5
50
1.25
58388--58416
3
9.7
3
100
0
58
31
0
0
68
0.89
60076--60114
17
2.3
17
95
0
69
41
38
15
5
1.69
65982--66019
17
2.4
16
87
12
53
42
39
13
5
1.66

Tables:   1

The End!