Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018106.1 Corchorus olitorius cultivar O-4 contig18139, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14398
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33


Found at i:5955 original size:26 final size:26

Alignment explanation


    Indices: 5918--5967  Score: 82
    Period size: 26  Copynumber: 1.9  Consensus size: 26

       5908 AAAATTTTGC

                   *                  
       5918 GGTTTTGGAGGTTATTTGGGGATTAG
          1 GGTTTTGCAGGTTATTTGGGGATTAG

                         *          
       5944 GGTTTTGCAGGTTTTTTGGGGATT
          1 GGTTTTGCAGGTTATTTGGGGATT

       5968 TCTTGATTAG


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  26   22  1.00

ACGTcount: A:0.12, C:0.02, G:0.40, T:0.46


Consensus pattern (26 bp):   
GGTTTTGCAGGTTATTTGGGGATTAG
Done.