Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018111.1 Corchorus olitorius cultivar O-4 contig18144, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7886

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
732--836
27
3.9
27
92
5
167
38
24
17
20
1.93
732--836
55
1.9
54
90
5
167
38
24
17
20
1.93
1212--1603
35
11.2
35
91
4
535
27
21
18
32
1.97
1785--2138
64
5.5
64
89
2
516
27
23
14
34
1.93
2106--2361
67
3.8
66
84
3
334
26
23
14
35
1.93
2106--2361
133
1.9
134
86
0
361
26
23
14
35
1.93
3779--3825
12
3.9
12
76
18
53
12
17
0
70
1.17
3864--3906
20
2.2
19
83
4
50
32
13
4
48
1.63
4468--4504
14
2.9
12
85
14
56
35
16
5
43
1.71
4474--4513
14
2.8
14
92
3
62
32
15
7
45
1.74
4477--4527
15
3.5
15
86
2
59
37
15
7
39
1.77

Tables:   1

The End!