Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018112.1 Corchorus olitorius cultivar O-4 contig18145, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15919

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1165--1240
28
2.8
27
88
7
109
38
26
17
18
1.92
1387--1441
21
2.6
21
88
0
74
16
49
21
12
1.79
1794--1823
15
2.1
14
93
6
51
13
16
6
63
1.50
2012--2046
18
1.9
18
100
0
70
45
11
2
40
1.55
2013--2054
18
2.3
18
91
0
66
47
14
2
35
1.57
8049--8106
19
2.9
19
87
5
80
29
22
12
36
1.90
8766--8898
69
1.9
69
83
11
175
48
14
15
22
1.80
9931--9968
2
19.0
2
94
0
67
50
2
0
47
1.15
11371--11523
37
4.0
37
84
7
191
33
15
15
35
1.88
11376--11525
79
2.0
75
88
7
223
32
15
16
36
1.90
14285--14326
21
2.0
21
95
0
75
16
19
30
33
1.94

Tables:   1

The End!