Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018113.1 Corchorus olitorius cultivar O-4 contig18146, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55373

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6519--6737
50
4.3
52
81
9
274
37
15
5
41
1.70
6519--6735
101
2.1
101
88
4
321
38
15
5
41
1.70
6519--6783
51
5.2
49
76
8
237
38
14
6
40
1.72
6521--6778
101
2.6
100
85
3
286
37
13
6
41
1.71
15510--15549
21
1.9
21
100
0
80
47
5
10
37
1.59
17160--17203
21
2.1
21
95
0
79
36
18
11
34
1.86
17843--18115
6
45.5
6
93
0
447
62
0
3
33
1.13
17843--18115
9
30.3
9
93
0
447
62
0
3
33
1.13
18595--18630
19
1.9
19
88
5
56
38
5
19
36
1.75
21671--21712
3
14.0
3
100
0
84
66
0
0
33
0.92
22132--22176
22
2.0
22
91
0
72
51
2
2
44
1.26
25994--26085
18
5.4
18
68
27
76
60
11
5
21
1.51
26013--26088
15
4.9
15
69
23
50
60
11
6
21
1.53
25995--26095
33
3.1
33
92
0
166
60
11
6
20
1.54
26006--26095
18
5.3
18
69
24
79
61
12
6
20
1.53
30419--30458
20
2.0
20
90
0
62
27
10
10
52
1.66
33422--33606
91
2.0
91
97
0
352
38
14
17
29
1.89
36890--37107
4
55.0
4
64
17
80
62
0
9
27
1.29
36905--37145
19
12.5
19
73
16
158
63
0
9
26
1.27
36984--37095
25
4.7
26
71
20
84
61
0
9
28
1.28
36917--37037
11
10.7
11
72
8
55
65
0
9
25
1.22
36887--37105
44
4.9
44
89
1
294
63
0
9
27
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36812--37113
8
37.9
8
66
19
73
61
0
10
26
1.36
36877--37145
19
14.8
18
70
20
104
63
0
8
27
1.26
38612--38974
54
6.7
55
85
6
433
31
21
18
28
1.97
38555--38966
162
2.5
158
84
7
483
31
22
17
28
1.97
43393--43426
4
8.5
4
100
0
68
76
0
0
23
0.79
48130--48177
11
4.7
11
80
12
50
39
10
20
29
1.86
50778--50819
15
2.7
15
96
3
75
11
7
14
66
1.43
53743--53832
44
2.0
44
100
0
180
48
15
8
26
1.74
54262--54350
4
23.5
4
70
13
55
66
1
6
25
1.23
54262--54347
27
3.3
27
82
6
79
66
1
6
25
1.24

Tables:   1

The End!