Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018118.1 Corchorus olitorius cultivar O-4 contig18151, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4148
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.30


Found at i:1304 original size:11 final size:11

Alignment explanation


    Indices: 1288--1329  Score: 84
    Period size: 11  Copynumber: 3.8  Consensus size: 11

       1278 AAATCTTCAA

                       
       1288 GTCTTCAAATG
          1 GTCTTCAAATG

                       
       1299 GTCTTCAAATG
          1 GTCTTCAAATG

                       
       1310 GTCTTCAAATG
          1 GTCTTCAAATG

                     
       1321 GTCTTCAAA
          1 GTCTTCAAA

       1330 CACGAACTTC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   31  1.00

ACGTcount: A:0.29, C:0.19, G:0.17, T:0.36


Consensus pattern (11 bp):   
GTCTTCAAATG

Found at i:2795 original size:14 final size:15

Alignment explanation


    Indices: 2776--2805  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2766 CAATCAAAGC

                           
       2776 AATAA-TCAAGGAAA
          1 AATAATTCAAGGAAA

                           
       2790 AATAATTCAAGGAAA
          1 AATAATTCAAGGAAA

             
       2805 A
          1 A

       2806 TTAAAAAGAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    5  0.33
  15   10  0.67

ACGTcount: A:0.63, C:0.07, G:0.13, T:0.17


Consensus pattern (15 bp):   
AATAATTCAAGGAAA

Done.