Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001812.1 Corchorus olitorius cultivar O-4 contig01812, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 683

Length: 1139
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:419 original size:31 final size:31

Alignment explanation


    Indices: 384--462  Score: 158
    Period size: 31  Copynumber: 2.5  Consensus size: 31

        374 AAAGAAATAG

                                           
        384 ATAAATTTGGTAGTGTTTTTTTTGAGGAAAA
          1 ATAAATTTGGTAGTGTTTTTTTTGAGGAAAA

                                           
        415 ATAAATTTGGTAGTGTTTTTTTTGAGGAAAA
          1 ATAAATTTGGTAGTGTTTTTTTTGAGGAAAA

                             
        446 ATAAATTTGGTAGTGTT
          1 ATAAATTTGGTAGTGTT

        463 AGTATTATTT


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   48  1.00

ACGTcount: A:0.32, C:0.00, G:0.23, T:0.46


Consensus pattern (31 bp):   
ATAAATTTGGTAGTGTTTTTTTTGAGGAAAA
Done.