Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018120.1 Corchorus olitorius cultivar O-4 contig18153, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31479

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3059--3128
30
2.3
29
79
13
79
31
17
10
41
1.82
3466--3507
15
2.7
15
92
3
66
64
14
9
11
1.50
4876--4906
11
2.8
11
100
0
62
29
19
16
35
1.93
7172--7201
14
2.1
14
93
0
51
23
33
3
40
1.71
8528--8568
19
2.2
18
86
4
55
29
19
4
46
1.71
9652--9687
18
2.1
18
89
5
56
38
11
5
44
1.63
15940--16000
21
2.9
21
90
0
86
59
27
1
11
1.42
16928--16953
13
2.0
13
100
0
52
38
23
0
38
1.55
18511--18611
49
2.1
49
90
3
159
44
18
4
31
1.71
21577--21617
19
2.2
18
86
4
55
29
19
4
46
1.71
25521--25631
35
3.2
35
65
25
90
55
25
10
8
1.61
26175--26245
15
4.2
17
72
22
51
39
2
1
56
1.23
27169--27210
15
2.7
15
92
3
66
69
11
7
11
1.37
29605--29647
23
2.0
22
86
9
61
55
18
16
9
1.67
29742--29791
21
2.4
21
86
0
64
12
22
48
18
1.80

Tables:   1

The End!