Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018125.1 Corchorus olitorius cultivar O-4 contig18158, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21217

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9037--9068
15
2.1
16
94
5
57
0
3
37
59
1.13
9750--9800
25
2.0
25
88
0
75
35
21
11
31
1.90
10156--10230
28
2.7
28
85
2
98
38
25
16
20
1.92
10809--10833
12
2.1
12
100
0
50
8
24
8
60
1.52
17328--17422
39
2.4
39
96
0
172
22
24
25
28
1.99
17419--17493
36
2.1
36
94
0
132
54
10
21
13
1.68
18134--18193
32
1.9
31
86
3
84
21
23
23
31
1.98
18042--18385
122
2.8
122
92
0
562
27
19
18
35
1.95
18254--18316
32
2.0
32
90
3
101
20
25
28
25
1.99
19537--19722
22
8.8
21
73
13
125
33
13
9
43
1.77
19581--19681
43
2.5
41
80
9
109
36
12
8
41
1.75
19683--19742
22
2.8
22
79
2
77
25
16
8
50
1.73
20575--20710
45
3.0
45
96
0
236
33
13
10
42
1.79

Tables:   1

The End!