Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018126.1 Corchorus olitorius cultivar O-4 contig18159, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10754
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


Found at i:1823 original size:15 final size:16

Alignment explanation


    Indices: 1793--1831  Score: 62
    Period size: 16  Copynumber: 2.4  Consensus size: 16

       1783 TTACTTTGCT

                            
       1793 TTGTTTTCTAGTTTAA
          1 TTGTTTTCTAGTTTAA

                            
       1809 TTGTTTTCT-GTTTAA
          1 TTGTTTTCTAGTTTAA

                    
       1824 TTGCTTTT
          1 TTG-TTTT

       1832 GTCAATCTCT


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  15    9  0.41
  16   13  0.59

ACGTcount: A:0.13, C:0.08, G:0.13, T:0.67


Consensus pattern (16 bp):   
TTGTTTTCTAGTTTAA
Done.