Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018128.1 Corchorus olitorius cultivar O-4 contig18161, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71673

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2050--2150
31
3.3
29
76
5
76
27
20
16
34
1.95
6254--6347
46
2.0
46
95
0
170
43
11
21
23
1.85
9152--9184
14
2.4
14
94
0
57
30
0
3
66
1.06
12840--13156
124
2.5
123
80
6
327
38
17
18
25
1.93
13210--13259
25
2.0
25
88
0
73
28
26
14
32
1.94
26455--26502
25
2.0
24
87
4
69
25
22
22
29
1.99
29709--29749
21
2.0
21
85
9
57
34
9
26
29
1.88
35682--36066
50
7.6
51
92
2
623
25
26
11
36
1.90
35823--35902
23
3.3
23
65
13
61
18
28
12
40
1.87
35682--36066
101
3.8
101
95
1
655
25
26
11
36
1.90
36088--36124
14
2.6
15
87
8
51
40
2
18
37
1.65
36294--36696
64
6.3
64
87
2
531
28
20
15
34
1.94
36294--36695
128
3.1
127
90
2
599
28
20
15
34
1.94
36464--36802
64
5.2
67
84
5
251
28
21
14
35
1.93
48093--48122
12
2.4
13
88
11
53
13
6
13
66
1.43
49663--49698
19
1.9
18
88
5
54
41
2
22
33
1.68
51328--51370
21
2.0
22
86
4
61
16
18
6
58
1.60
56402--57071
334
2.0
334
100
0
1340
28
17
24
29
1.97
66542--66577
19
1.9
18
88
5
54
30
22
5
41
1.76

Tables:   1

The End!