genome.fa.s18132.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018132.1 Corchorus olitorius cultivar O-4 contig18165, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136096

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6781--6846	31	2.2	31	91	2	107	30	10	28	30	1.90
11696--11829	60	2.2	60	89	2	198	36	12	18	32	1.89
11691--11795	31	3.5	30	69	5	86	36	12	19	32	1.89
11718--11843	60	2.1	60	86	0	171	37	14	18	30	1.90
11903--12066	60	2.7	60	88	1	231	28	18	18	34	1.95
11968--12070	31	3.4	31	71	12	106	31	18	15	34	1.92
11938--12035	29	3.3	29	69	10	81	29	18	17	34	1.94
29708--29762	30	2.0	28	82	13	69	36	10	10	41	1.75
39916--39966	25	2.0	25	84	0	66	19	11	43	25	1.85
39981--40017	19	1.9	19	94	0	65	37	13	18	29	1.90
42478--42568	46	2.0	46	97	0	173	37	16	8	37	1.80
48815--48841	14	1.9	14	100	0	54	0	40	7	51	1.30
50040--50132	46	2.0	46	97	0	177	26	12	30	30	1.93
50768--50807	20	2.1	19	90	4	62	60	2	7	30	1.38
53557--53595	6	6.5	6	100	0	78	51	0	15	33	1.44
54700--54738	16	2.5	15	87	4	51	79	0	20	0	0.73
74417--74453	19	1.9	19	88	0	56	29	21	10	37	1.88
74999--75038	21	1.9	21	94	0	71	37	10	17	35	1.83
83171--83207	15	2.5	15	86	0	56	37	18	13	29	1.90
90386--90443	19	2.9	19	79	5	53	37	10	18	32	1.85
94244--94279	6	6.0	6	93	0	54	50	44	0	5	1.25
114425--114613	92	2.1	91	96	2	353	24	4	23	47	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114618--114701	42	2.0	42	90	0	132	32	10	21	35	1.88
119885--120007	31	4.0	31	90	0	156	25	22	19	32	1.97
119881--120068	31	6.1	31	83	2	135	21	21	22	34	1.97
120796--120833	3	13.0	3	86	5	51	71	2	0	26	1.00
132440--136095	331	11.3	329	82	7	4191	36	15	15	32	1.89
132170--136095	645	6.1	647	83	6	4136	36	15	15	33	1.88

Tables:   1

The End!