Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018133.1 Corchorus olitorius cultivar O-4 contig18166, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2681
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Found at i:415 original size:226 final size:225
Alignment explanation
Indices: 64--517 Score: 707
Period size: 226 Copynumber: 2.0 Consensus size: 225
54 AACTGAGTCA
* ** *
64 GACCCAGGAATACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTGAAATTTTT
1 GACCCACGAATACAATTTTAGCCAAAAACCGTGATGGTTAGTAAACGATTTCAGCTGAAATTTTT
129 AAAAAATTGACCCGAAAAATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATATAATTC
66 AAAAAATTGACCCGAAAAATTTTTCCTCAAATTTTAGCCACAATAATCA-AGAAATATATAATTC
194 AACAT-AATAAAGATTGAAGGGCTTGTCACGCTTCTAATAT-TATTTTTCCATTTTTTTCTGAAT
130 AACATCAA-AAAGATTGAAGGGCTTGTCACGCTTCTAATATCT-TTTTTCCATTTTTTTCTGAAT
* *
257 CAATTTCTAATAAAGTCGAAACAAGATTCTGAT
193 CAATTTCAAATAAAATCGAAACAAGATTCTGAT
*
290 GACCCACGAATACAATTTTAGCCAAAAACCGTGATGGTTAGTAAACGATTTCGGCTGAAATTTTA
1 GACCCACGAATACAATTTTAGCCAAAAACCGTGATGGTTAGTAAACGATTTCAGCTGAAATTTT-
* *
355 TAAAAAAATTGACCCGAAAGATTTTTCCTCAAATTTTAGCCACAATAATC-AGACATATATAATT
65 T-AAAAAATTGACCCGAAAAATTTTTCCTCAAATTTTAGCCACAATAATCAAGAAATATATAATT
* * *
419 CAACATCAAAAAGATTGAAGGGCTTTTCACGCTTTTAATATCGTTTTTTTCATTTTTTTCTGAAT
129 CAACATCAAAAAGATTGAAGGGCTTGTCACGCTTCTAATATC-TTTTTTCCATTTTTTTCTGAAT
* *
484 TAATTTCAAATAAAATTGAAACAAGATTCTGAT
193 CAATTTCAAATAAAATCGAAACAAGATTCTGAT
517 G
1 G
518 CTCGTAAAAC
Statistics
Matches: 209, Mismatches: 14, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
226 108 0.52
227 53 0.25
228 48 0.23
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (225 bp):
GACCCACGAATACAATTTTAGCCAAAAACCGTGATGGTTAGTAAACGATTTCAGCTGAAATTTTT
AAAAAATTGACCCGAAAAATTTTTCCTCAAATTTTAGCCACAATAATCAAGAAATATATAATTCA
ACATCAAAAAGATTGAAGGGCTTGTCACGCTTCTAATATCTTTTTTCCATTTTTTTCTGAATCAA
TTTCAAATAAAATCGAAACAAGATTCTGAT
Found at i:1329 original size:333 final size:331
Alignment explanation
Indices: 305--1607 Score: 2151
Period size: 331 Copynumber: 3.9 Consensus size: 331
295 ACGAATACAA
* * * *
305 TTTTAGCCAAAAACCGTGATGGTTAGTAAACGATTTCGGCTGAAATTTTATAAAAAAATTGACCC
1 TTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCT-AAAATTT-TACAAAAATTGACCC
*
370 GAAAGATTTTTCCTCAAATTTTAGCCACAATAATC--AGACATATATAATTCAACATCAAAAAGA
64 GAAAGATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATATAATTCAACATCAAAAAGA
* * *
433 TTGAAGGGCTTTTCACGCTTTTAATATCGTTTTTTTCATTTTTTTCTGAATTAATTTCAAATAAA
129 TTGAAGGGCTTTTCACACTTCTAATATCG-TTTTTCCATTTTTTTCTGAATTAATTTCAAATAAA
* *
498 ATTGAAACAAGATTCTGATGCTCGTAAAACCAAATCCTTAAATCCACTGTGGCTGAGATTTGGTT
193 ATCGAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTGAGATTTGGTT
* *
563 AGATGAATATAGATATTACAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGTCGGGACCCA
258 AGATGAATATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAAAACTGAGTCGGGACCCA
628 GGAATGCGT
323 GGAATGCGT
* *
637 TTTAAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTGAAATTTTACAAAAATTGACCCGA
1 TTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTACAAAAATTGACCCGA
702 AAGATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATATAATTCAACATCAAAAAGATT
66 AAGATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATATAATTCAACATCAAAAAGATT
* * *
767 GAAGGGCTTTTCACACTTCTAATATCGTTTTTCCATTTTTTTTTGAATTAATTTCTAATAAAGTC
131 GAAGGGCTTTTCACACTTCTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCAAATAAAATC
832 GAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTGAGATTTGGTTAGA
196 GAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTGAGATTTGGTTAGA
* *
897 TGAATATAGATTTTTCAAGGAGTCTTGGCGACAAAAATCATGCAAAACTGAGTCGGGACCCAGGA
261 TGAATATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAAAACTGAGTCGGGACCCAGGA
962 ATGCGT
326 ATGCGT
968 TTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTACAAAAATTGACCCGA
1 TTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTACAAAAATTGACCCGA
* * *
1033 AAGATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATGTAATTCAACTTCAAAAATATT
66 AAGATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATATAATTCAACATCAAAAAGATT
* *
1098 GAAGGGCTTTTAACACTTCTAATATCGTTTTTCCCATTTTTTTCAAGAATTAATTTCAAATAAAA
131 GAAGGGCTTTTCACACTTCTAATATCGTTTTT-CCATTTTTTTC-TGAATTAATTTCAAATAAAA
** * *
1163 TTAAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGTTT
194 TCGAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTGAGATTTGGTTA
* *
1228 GATGAATATAGATTTTTCAAGGAGTCTTGGCGTCAAAAATCATGCAAAACTGAGTCGGGACTCAG
259 GATGAATATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAAAACTGAGTCGGGACCCAG
*
1293 GAATGAGT
324 GAATGCGT
* * *
1301 TTTTAGACAAAAAGCGTGATGGTTAGTACACGATTTCAGCAAAAATTTTACAAAAATTGACCCGA
1 TTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTACAAAAATTGACCCGA
* *
1366 AAGATTTTTCCTCAAATTTTAGCCACAATAATTATAGAAATATATAATTCAACATAAAAAAGATT
66 AAGATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATATAATTCAACATCAAAAAGATT
* * *
1431 GACGGCCTTTTCACACTTCTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATAAAATC
131 GAAGGGCTTTTCACACTTCTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCAAATAAAATC
* *
1496 GAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCAGTTTGGCTGAGATTTGGTTAGA
196 GAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTGAGATTTGGTTAGA
* * *
1561 TGAATATAGATATTTCAAGGAGTCTTGACTTCAAAAATCATTCAAAA
261 TGAATATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAAAA
1608 TTGATGGGAT
Statistics
Matches: 910, Mismatches: 57, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
330 49 0.05
331 449 0.49
332 113 0.12
333 299 0.33
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (331 bp):
TTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTACAAAAATTGACCCGA
AAGATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATATAATTCAACATCAAAAAGATT
GAAGGGCTTTTCACACTTCTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCAAATAAAATC
GAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTGAGATTTGGTTAGA
TGAATATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAAAACTGAGTCGGGACCCAGGA
ATGCGT
Found at i:1579 original size:664 final size:663
Alignment explanation
Indices: 305--1607 Score: 2196
Period size: 664 Copynumber: 2.0 Consensus size: 663
295 ACGAATACAA
* *
305 TTTTAGCCAAAAACCGTGATGGTTAGTAAACGATTTCGGCTGAAATTTTATAAAAAAATTGACCC
1 TTTTAGCCAAAAACCGTGATGGTTAGTAAACGATTTCAGCTGAAAATTTATAAAAAAATTGACCC
*
370 GAAAGATTTTTCCTCAAATTTTAGCCACAATAATCAGACATATATAATTCAACATCAAAAAGATT
66 GAAAGATTTTTCCTCAAATTTTAGCCACAATAATCAGAAATATATAATTCAACATCAAAAAGATT
* * * ** *
435 GAAGGGCTTTTCACGCTTTTAATATCGTTTTTTTCATTTTTTTCTGAATTAATTTCAAATAAAAT
131 GAAGGGCTTTTAACACTTCTAATATCGTTTTTCCCATTTTTTTCAGAATTAATTTCAAATAAAAT
* *
500 TGAAACAAGATTCTGATGCTCGTAAAACCAAATCCTTAAATCCACTGTGGCTGAGATTTGGTTAG
196 TAAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTGAGATTTGGTTAG
565 ATGAATATAGATATTACAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGTCGGGACCCAGG
261 ATGAATATAGATATTACAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGTCGGGACCCAGG
* * **
630 AATGCGTTTTAAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTGAAATTTTACAAAAATT
326 AATGAGTTTTAAGACAAAAACCGTGATGGTTAGTACACGATTTCAGCAAAAATTTTACAAAAATT
*
695 GACCCGAAAGATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATATAATTCAACATCAA
391 GACCCGAAAGATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATATAATTCAACATAAA
* *
760 AAAGATTGAAGGGCTTTTCACACTTCTAATATCGTTTTTCCATTTTTTTTTGAATTAATTTCTAA
456 AAAGATTGAAGGCCTTTTCACACTTCTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAA
*
825 TAAAGTCGAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTGAGATTT
521 TAAAATCGAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTGAGATTT
* *
890 GGTTAGATGAATATAGATTTTTCAAGGAGTCTTGGCGACAAAAATCATGCAAAACTGAGTCGGGA
586 GGTTAGATGAATATAGATATTTCAAGGAGTCTTGACGACAAAAATCATGCAAAACTGAGTCGGGA
955 CCCAGGAATGCGT
651 CCCAGGAATGCGT
* *
968 TTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCT-AAAATTT-TACAAAAATTGACCC
1 TTTTAGCCAAAAACCGTGATGGTTAGTAAACGATTTCAGCTGAAAATTTATAAAAAAATTGACCC
* * *
1031 GAAAGATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATGTAATTCAACTTCAAAAATA
66 GAAAGATTTTTCCTCAAATTTTAGCCACAATAATC--AGAAATATATAATTCAACATCAAAAAGA
1096 TTGAAGGGCTTTTAACACTTCTAATATCGTTTTTCCCATTTTTTTCAAGAATTAATTTCAAATAA
129 TTGAAGGGCTTTTAACACTTCTAATATCGTTTTTCCCATTTTTTTC-AGAATTAATTTCAAATAA
*
1161 AATTAAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGT
193 AATTAAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTGAGATTTGGT
* * * * *
1226 TTGATGAATATAGATTTTTCAAGGAGTCTTGGCGTCAAAAATCATGCAAAACTGAGTCGGGACTC
258 TAGATGAATATAGATATTACAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGTCGGGACCC
* *
1291 AGGAATGAGTTTTTAGACAAAAAGCGTGATGGTTAGTACACGATTTCAGCAAAAATTTTACAAAA
323 AGGAATGAGTTTTAAGACAAAAACCGTGATGGTTAGTACACGATTTCAGCAAAAATTTTACAAAA
*
1356 ATTGACCCGAAAGATTTTTCCTCAAATTTTAGCCACAATAATTATAGAAATATATAATTCAACAT
388 ATTGACCCGAAAGATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATATAATTCAACAT
*
1421 AAAAAAGATTGACGGCCTTTTCACACTTCTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTC
453 AAAAAAGATTGAAGGCCTTTTCACACTTCTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTC
* *
1486 TAATAAAATCGAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCAGTTTGGCTGAGA
518 TAATAAAATCGAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTGAGA
** *
1551 TTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGACTTCAAAAATCATTCAAAA
583 TTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGACGACAAAAATCATGCAAAA
1608 TTGATGGGAT
Statistics
Matches: 596, Mismatches: 41, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
661 49 0.08
662 6 0.01
663 104 0.17
664 437 0.73
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (663 bp):
TTTTAGCCAAAAACCGTGATGGTTAGTAAACGATTTCAGCTGAAAATTTATAAAAAAATTGACCC
GAAAGATTTTTCCTCAAATTTTAGCCACAATAATCAGAAATATATAATTCAACATCAAAAAGATT
GAAGGGCTTTTAACACTTCTAATATCGTTTTTCCCATTTTTTTCAGAATTAATTTCAAATAAAAT
TAAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTGAGATTTGGTTAG
ATGAATATAGATATTACAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGTCGGGACCCAGG
AATGAGTTTTAAGACAAAAACCGTGATGGTTAGTACACGATTTCAGCAAAAATTTTACAAAAATT
GACCCGAAAGATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATATAATTCAACATAAA
AAAGATTGAAGGCCTTTTCACACTTCTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAA
TAAAATCGAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTGAGATTT
GGTTAGATGAATATAGATATTTCAAGGAGTCTTGACGACAAAAATCATGCAAAACTGAGTCGGGA
CCCAGGAATGCGT
Found at i:1738 original size:179 final size:179
Alignment explanation
Indices: 1438--1763 Score: 571
Period size: 179 Copynumber: 1.8 Consensus size: 179
1428 ATTGACGGCC
* * *
1438 TTTTCACACTTCTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATAAAATCGAAACAA
1 TTTTCACACTTCTAATATCGTTTATCCATTTTTTTCTAAATTAATTTCAAATAAAATCGAAACAA
* *
1503 GATTCTGATGCTCGTAAAAACAAATCCTTAAATCCAGTTTGGCTGAGATTTGGTTAGATGAATAT
66 GATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTATGGCTGAGATTTGGTTAGATGAATAT
1568 AGATATTTCAAGGAGTCTTGACTTCAAAAATCATTCAAAATTGATGGGA
131 AGATATTTCAAGGAGTCTTGACTTCAAAAATCATTCAAAATTGATGGGA
* *
1617 TTTTCACGCTTCTAATATCGTTTATCCATTTTTTTCTAAATTAATTTCAAATAAAATTGAAACAA
1 TTTTCACACTTCTAATATCGTTTATCCATTTTTTTCTAAATTAATTTCAAATAAAATCGAAACAA
*
1682 GATTCTGATGCTCGTAAAACCAAATCCTTAAATCCACTATGGCTGAGATTTGGTTAGATGAATAT
66 GATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTATGGCTGAGATTTGGTTAGATGAATAT
*
1747 AGATTTTTCAAGGAGTC
131 AGATATTTCAAGGAGTC
1764 GTGGCGCTGA
Statistics
Matches: 138, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
179 138 1.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (179 bp):
TTTTCACACTTCTAATATCGTTTATCCATTTTTTTCTAAATTAATTTCAAATAAAATCGAAACAA
GATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTATGGCTGAGATTTGGTTAGATGAATAT
AGATATTTCAAGGAGTCTTGACTTCAAAAATCATTCAAAATTGATGGGA
Found at i:2558 original size:331 final size:329
Alignment explanation
Indices: 1607--2681 Score: 1591
Period size: 331 Copynumber: 3.2 Consensus size: 329
1597 ATCATTCAAA
* * *
1607 ATTGATGGGATTTTCACGCTTCTAATATCGTTTATCCATTTTTTTCTAAATTAATTTCAAATAAA
1 ATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCTAAATTAATTTCAAATAAA
*
1672 ATTGAAACAAGATTCTGATGCTCGTAAAACCAAATCCTTAAATCCACTATGGCTGAGATTTGGTT
66 ATTGAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTATGGCTGAGATTTGGTT
* *
1737 AGATGAATATAGATTTTTCAAGGAGTCGTGGCGCTGAAAATCATGCAAAACTGAGTCGGGACCCA
131 AGATGAATATAGATTTTTCAAGGAGTCTTGGCGC-CAAAATCATGCAAAACTGAGTCGGGACCCA
* *
1802 GGAATGCGTTTTTAGCGAAAAACCGTGATGGTTAGTACACAATTTCAGCTAAAATTTTACAAAAA
195 GGAATGCGTTTTTAGCCAAAAACCGTAAT-GTTAGTACACAATTTCAGCTAAAATTTTACAAAAA
*
1867 TTGACCCGAAAGATTTTTCCTCAAATTTTAGCCAAAATAATCATAGAAATATATAATTCAACATA
259 TTGACCCGAAAGATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATATAATTCAACATA
1932 AAAAAG
324 AAAAAG
* * * * * *
1938 ATTGATGAGCATTTCACACTTCTAATATCGTTTTTCCA-TTTTTTCTGAATTAATTTCTAATAAA
1 ATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCTAAATTAATTTCAAATAAA
* * *
2002 ATCGAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTCAATCCACTGTGGCTGAGATTTGGTT
66 ATTGAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTATGGCTGAGATTTGGTT
* * *
2067 AGATAAATATAGATTTTTGAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTAAGTCGGGACCCA
131 AGATGAATATAGATTTTTCAAGGAGTCTTGGCGCC-AAAATCATGCAAAACTGAGTCGGGACCCA
* *
2132 GGAATGCGTTTTTAGCCAAAAACCGTGATTGTTAGTACACGATTTCAGCTAAAATTTTACAAAAA
195 GGAATGCGTTTTTAGCCAAAAACCGT-AATGTTAGTACACAATTTCAGCTAAAATTTTAC-AAAA
* *
2197 AATGACCCGAAAGATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATATAATTCAACTT
258 ATTGACCCGAAAGATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATATAATTCAACAT
*
2262 CAAAAAG
323 AAAAAAG
* * * *
2269 ATTGAAGGGCTTTTCACGCTTTTAATATCGTTTTTTCATTTTTTTCTGAATTATTTTCAAATAAA
1 ATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCTAAATTAATTTCAAATAAA
* * * *
2334 ATTGAAACAAGATTCCGATGTTCGTAAAAACAAATTCTTAAATCCATTATGGCTGAGATTTGGTT
66 ATTGAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTATGGCTGAGATTTGGTT
* * * *
2399 AGATGAATATAGATTTTTCAAGGAGTCTTGGCACCAAAATTGACGCAAAACTGAG-CCGGAGCCC
131 AGATGAATATAGATTTTTCAAGGAGTCTTGGCGCCAAAA-TCATGCAAAACTGAGTCGGGA-CCC
* * * * *
2463 ATGAACGCGTTTTTAGCCACATATCGTAATGATTAGTACACAATTTCAGCTAAAATTTTACAAAA
194 AGGAATGCGTTTTTAGCCAAAAACCGTAATG-TTAGTACACAATTTCAGCTAAAATTTTACAAAA
* * *
2528 ATTGACCCAAAACG-TTTTTCCTCAAATTTTAGCCACAATATTCATAGACATATATAATTCAACA
258 ATTGACCCGAAA-GATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATATAATTCAACA
2592 TAAAAAAG
322 TAAAAAAG
2600 ATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTTCTAAATTAATTT-ATAATA
1 ATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTTTCTAAATTAATTTCA-AATA
* *
2664 AAATTGAATCATGATTCT
64 AAATTGAAACAAGATTCT
Statistics
Matches: 668, Mismatches: 66, Indels: 19
0.89 0.09 0.03
Matches are distributed among these distances:
330 198 0.30
331 254 0.38
332 216 0.32
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (329 bp):
ATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCTAAATTAATTTCAAATAAA
ATTGAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCACTATGGCTGAGATTTGGTT
AGATGAATATAGATTTTTCAAGGAGTCTTGGCGCCAAAATCATGCAAAACTGAGTCGGGACCCAG
GAATGCGTTTTTAGCCAAAAACCGTAATGTTAGTACACAATTTCAGCTAAAATTTTACAAAAATT
GACCCGAAAGATTTTTCCTCAAATTTTAGCCACAATAATCATAGAAATATATAATTCAACATAAA
AAAG
Done.