Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018138.1 Corchorus olitorius cultivar O-4 contig18171, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55421
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--39 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
40 GAAATGTTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:913 original size:2 final size:2
Alignment explanation
Indices: 906--935 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
896 CAATTATTGA
906 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
936 CCTAATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6257 original size:22 final size:23
Alignment explanation
Indices: 6227--6271 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
6217 GTTTTTTTCT
*
6227 CTTTTTTTCTAAAT-TCTTCATC
1 CTTTCTTTCTAAATGTCTTCATC
6249 CTTTCTTTCTAAATGTCTTCATC
1 CTTTCTTTCTAAATGTCTTCATC
6272 AACAAGTACT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.18, C:0.24, G:0.02, T:0.56
Consensus pattern (23 bp):
CTTTCTTTCTAAATGTCTTCATC
Found at i:23598 original size:1 final size:1
Alignment explanation
Indices: 23592--23618 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
23582 GGCATCGACC
23592 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
23619 AGTAAAGCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:24004 original size:87 final size:87
Alignment explanation
Indices: 23886--24116 Score: 311
Period size: 87 Copynumber: 2.6 Consensus size: 87
23876 CATGGCCGAT
* * *
23886 TATCAGGAAATAAATCCTAAGTTGACATGGCATTTCCTAGTCACATAGCATGCTGATGTTGCCAC
1 TATCAGGAAATAAACCCAAAGTTGACATGGCATTTTCTAGTCACATAGCATGCTGATGTTGCCAC
* * *
23951 GT-GCCAAGAAACGTGGCTAAAC
66 GTAACC-AGAAACGTAGCCAAAC
* *
23973 TATCAGGAAATAAACCCCAAGTTGACATGGCATTTTCTAGTCACATAGCATGTTGATGTTGCCAC
1 TATCAGGAAATAAACCCAAAGTTGACATGGCATTTTCTAGTCACATAGCATGCTGATGTTGCCAC
24038 GTAACCAGAAACGTAGCCAAAC
66 GTAACCAGAAACGTAGCCAAAC
* * ** * *
24060 CATTAGGAAATAAACATTAAAGTTGACGTGGCATTTTCTAGTCACATAACATGCTGA
1 TATCAGGAAATAAAC-CCAAAGTTGACATGGCATTTTCTAGTCACATAGCATGCTGA
24117 CGTGGACTTT
Statistics
Matches: 127, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
87 90 0.71
88 37 0.29
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (87 bp):
TATCAGGAAATAAACCCAAAGTTGACATGGCATTTTCTAGTCACATAGCATGCTGATGTTGCCAC
GTAACCAGAAACGTAGCCAAAC
Found at i:42395 original size:27 final size:27
Alignment explanation
Indices: 42357--42412 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
42347 TGGAATTTCG
42357 ATCTTATATTTTATTTTTCTCACCTGA
1 ATCTTATATTTTATTTTTCTCACCTGA
42384 ATCTTATATTTTATTTTTCTCACCTGA
1 ATCTTATATTTTATTTTTCTCACCTGA
42411 AT
1 AT
42413 GCTTGTTGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.23, C:0.18, G:0.04, T:0.55
Consensus pattern (27 bp):
ATCTTATATTTTATTTTTCTCACCTGA
Found at i:48067 original size:12 final size:12
Alignment explanation
Indices: 48052--48076 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48042 TTTGTTTCAT
48052 ATTTTTTAATTA
1 ATTTTTTAATTA
48064 ATTTTTTAATTA
1 ATTTTTTAATTA
48076 A
1 A
48077 ATCGAAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
ATTTTTTAATTA
Found at i:49629 original size:323 final size:322
Alignment explanation
Indices: 48237--50458 Score: 2695
Period size: 323 Copynumber: 6.9 Consensus size: 322
48227 CCATTATGGT
* * *
48237 AAAA-TGACCCG-AAAGATTTTTCCTCAA-TTTTTGACAAAAATACTCATAAAATATATATAATT
1 AAAACTGACCCGAAAAG-TTTTTCCTCAATTTTTTG-CCACAATACTCATAAAAAATATATAATT
* ** * * * *
48299 CAACGCC-AAAAAGATTGTAGGACTTTTCACGCTTCCAATATCGTTTTT-CATATTTTTTCTGAA
64 CAACGCCAAAAAAG-TTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTTTCCGAA
* * * * * * * *
48362 TTAATTTCTAATTAAATCGAAAAAAGATTCAAATGCACGTAAAAACAAATCCTTAAATTCAATGT
128 TTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTTAATCCATTGT
* * * * * * *
48427 GGCTGAGATTTGATTAGATGAAAAAAAGATATTTCAAGGAGTCTTTATGCCAAAAA-CTATGCAA
193 GGCTGAGATTTGGTTAGAT-AGATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATC-ATTCAA
* * *
48491 AACTGAGACGAGGCCCCGAAACGCGTTTTTACCCAAAAACCGTGA----T-G--C--GATTTCGG
256 AACTGAGTC-AGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATGATATCGG
*
48547 CTA
320 CCA
* * *
48550 AAAATTGACCCGAAAAGTTTATCCTCATTTTTTTGCCACAATACT--TAGAAAAA-ATATAATTC
1 AAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCATA-AAAAATATATAATTC
* * * * * *
48612 AACGTCAAAAAAATTGAAGGGTTTTTCACGCTTCCAATATCGTTTTTCC--ATGTGTTCCGAATT
65 AACGCCAAAAAAGTTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTTTCCGAATT
* * * *
48675 TATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAAATCCTTAAATCTATTGTGG
130 TATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTTAATCCATTGTGG
* * *
48740 CTGAGATTTGGCTAGAT-GAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAAC
195 CTGAGATTTGGTTAGATAG-ATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATCATTCAAAAC
* * * * * * * * *
48804 TGAGCCTGGACCCCGACACGAGTTTTTAACCAAAAACCGTGATGATTAGTACACGA-ATTCAGCT
259 TGAGTCAGG-CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATGATA-TCGGCC
48868 A
322 A
* ** * * *
48869 AAAACTGACCCGAAGAGTTTTTACC-CAACTTCTTTTTTCAAAATATTCAGAAAAAATATATAAT
1 AAAACTGACCCGAAAAGTTTTT-CCTCAA-TT-TTTTGCCACAATACTCATAAAAAATATATAAT
* * *
48933 TCAACGCC-AAAAAGATTGACGGGTTTTTCACGCTTCTAATATAGTTTTTCC---ATTTTTCCGA
63 TCAACGCCAAAAAAG-TTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTTTCCGA
* * * *** * *
48994 ATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGT-TTTACAAATCCTTAAATCCAATG
127 ATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTTAATCCATTG
* * * * * *
49058 CGGCTGAGATTTGCTTCGATAAATATAGATATTTCAAGGAGTCTTTAC-GACAAAAATCATTCAA
192 TGGCTGAGATTTGGTTAGATAGATATAGATATTTCAAAGAGTCTTT-CTGCCAAAAATCATTCAA
* * * * * *
49122 AGCTGAG-CTAGGGCCCTGGAACGCATTTTTAGCC-AAAACGGTGATGAG-TA-AACAATTTCGA
256 AACTGAGTC-A-GGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATG-GTTAGTAC-A--T-GA
**
49183 CTAAAATTTTG-CA
314 -T---A-TCGGCCA
* * * * *
49196 AAAATTGACCCGAAAATTTTTTCCTCAATTCTTTGCCACAATACTCAGAAAAAATATATAATCCA
1 AAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTCA
* * *
49261 ACGCCAAAAAAATTAAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTTTCCAAATTT
66 ACGCCAAAAAAGTTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTTTCCGAATTT
* * * *
49326 ATTTCGAATTAAATCGAAATAAGAATCAGATGCTCGTAAAAAGAAATCTTTTAATCCATTGTGGC
131 ATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTTAATCCATTGTGGC
* *
49391 TGAGACTTGGTTAGATAGATATAGATATTTCAAAGAGTATTTCTGCCAAAAATCATTCAAAACTG
196 TGAGATTTGGTTAGATAGATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATCATTCAAAACTG
* * *
49456 AGTCAAGCCCCGAAATGCGTTTTGAGCCAAAAACCTGTGATGGTTAGTACATGATATCGGCCA
261 AGTCAGGCCCCGAAACGCGTTTTTAGCCAAAAACC-GTGATGGTTAGTACATGATATCGGCCA
49519 AAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTTGCCACAATACTCATAAAAAATATATAATTC
1 AAAACTGACCCGAAAAGTTTTTCCTCAA-TTTTTTGCCACAATACTCATAAAAAATATATAATTC
* * * * *
49584 AATGCCAAAAGAGTTGAAGGG-TTTTCATGCTACTAATATCGTTTTTCCTTTTATTTTCCGAATT
65 AACGCCAAAAAAGTTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTTTCCGAATT
49648 TATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTTAATCCATTGTGG
130 TATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTTAATCCATTGTGG
*
49713 CTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCAT-CCAAAAATCATTCAAAAC
195 CTGAGATTTGGTTAGATAGATATAGATATTTCAAAGAGTCTTTC-TGCCAAAAATCATTCAAAAC
* *
49777 TGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACTGTGATGGTTAGTACATGATTTCGGCCA
259 TGAGTC-AGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATGATATCGGCCA
*
49842 AAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTC-GAAAAAATATATAATTCA
1 AAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTCA
* * * **
49906 ACGCCAAAAAAATTAAAGGGTTTTTCACGCCTCTAATATCG-TTTTCCTTTTTTTTTTCTAAATT
66 ACGCCAAAAAAGTTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCC-TTTTTTTTTCCGAATT
* * * *
49970 TATTTTGAATTAAATCGAAACAAGAATCAGATGCTCGTAAAAAGAAATCTTTTAATCCATTGTGG
130 TATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTTAATCCATTGTGG
50035 CTGAGATTTGGTTAGATAGATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATCATTCAAAACT
195 CTGAGATTTGGTTAGATAGATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATCATTCAAAACT
*
50100 GAGTC-GAGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATGATTTCGGCCA
260 GAGTCAG-GCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATGATATCGGCCA
* * *
50163 AATACTGACCCGAAAAGTTTTTCCTCAATTTTTCGCCACAATACTTATAAAAAATATATAATTCA
1 AAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTCA
* * *
50228 ACGCCAAAGAAGTTGAAGGGTTTTTCACGCTTCAAATATCGTTTTTCCTCTTTATTTTCCGAATT
66 ACGCCAAAAAAGTTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCT-TTTTTTTTCCGAATT
50293 TATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTTAATCCATTGTGG
130 TATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTTAATCCATTGTGG
*
50358 CTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATCATTCAAAACT
195 CTGAGATTTGGTTAGATAGATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATCATTCAAAACT
*
50423 GAGTGGAGGCCCCGAAACGCGTTTTTAGCCAAAAAC
260 GAGT-CAGGCCCCGAAACGCGTTTTTAGCCAAAAAC
50459 TGGGCAAAAT
Statistics
Matches: 1657, Mismatches: 187, Indels: 119
0.84 0.10 0.06
Matches are distributed among these distances:
309 2 0.00
310 74 0.04
311 84 0.05
312 47 0.03
313 14 0.01
314 25 0.02
315 11 0.01
317 1 0.00
319 31 0.02
320 20 0.01
321 241 0.15
322 291 0.18
323 445 0.27
324 106 0.06
325 68 0.04
326 10 0.01
327 25 0.02
328 67 0.04
329 83 0.05
330 10 0.01
331 2 0.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (322 bp):
AAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTCA
ACGCCAAAAAAGTTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTTTCCGAATTT
ATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTTAATCCATTGTGGC
TGAGATTTGGTTAGATAGATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATCATTCAAAACTG
AGTCAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATGATATCGGCCA
Found at i:50003 original size:645 final size:641
Alignment explanation
Indices: 48237--50460 Score: 2915
Period size: 645 Copynumber: 3.5 Consensus size: 641
48227 CCATTATGGT
* *
48237 AAAA-TGACCCG-AAAGATTTTTCCTCAA-TTTTTGACAAAAATACTCATAAAATATATATAATT
1 AAAACTGACCCGAAAAG-TTTTTCCTCAATTTTTTG-CCAAAATACTCATAAAAAATATATAATT
* ** * * * *
48299 CAACGCCAAAAAGATTGTAGGACTTTTCACGCTTCCAATATCGTTTTTCATATTTTTTCTGAATT
64 CAACGCCAAAAAGATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTTCCGAATT
* * * * *
48364 AATTTCTAATTAAATCGAAAAAAGATTCAAATGCACGTAAAAACAAATCCTTAAATTCAATGTGG
129 AATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGG
* * * * *
48429 CTGAGATTTGATTAGATGAAAAAAAGATATTTCAAGGAGTCTTTATGCCAAAAA-CTATGCAAAA
194 CTGAGATTTGGTTAGATG-AATATAGATATTTCAAAGAGTCTTTATGCCAAAAATC-ATTCAAAA
* * * *
48493 CTGAGACGAGGCCCCGAAACGCGTTTTTACCCAAAAACCGTGA---T-G-C--GATTTCGGCTAA
257 CTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACTGTGATGGTAGACATGATTTCGGCCAA
* * *
48551 AAATTGACCCGAAAAGTTTATCCTCATTTTTTTGCCACAATACT-TAGAAAAA-ATATAATTCAA
322 AAATTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCGA-AAAAATATATAATTCAA
* * * * * * *
48614 CGTCAAAAAAATTGAAGGGTTTTTCACGCTTCCAATATCGTTTTTCC--ATGTGTTCCGAATTTA
386 CGCCAAAAAAATTAAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTTTCCAAATTTA
* * * *
48677 TTTCT-AATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAAATCCTTAAATCTATTGTGGC
451 TTT-TGAATTAAATCGAAACAAGAATCAGATGCTCGTAAAAAGAAATCTTTTAATCCATTGTGGC
* * *
48741 TGAGATTTGGCTAGAT-GAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACT
515 TGAGATTTGGTTAGATAG-ATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATCATTCAAAACT
* ** * * * * * * *
48805 GAGCCTGGACCCCGACACGAGTTTTTAACCAAAAACCGTGATGATTAGTACACGA-ATTCAGCTA
579 GAGTCAAG-CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATGATA-TCGGCCA
* ** * *
48869 AAAACTGACCCGAAGAGTTTTTACC-CAACTTCTTTTTTCAAAATATTCAGAAAAAATATATAAT
1 AAAACTGACCCGAAAAGTTTTT-CCTCAA-TT-TTTTGCCAAAATACTCATAAAAAATATATAAT
* * *
48933 TCAACGCCAAAAAGATTGACGGGTTTTTCACGCTTCTAATATAGTTTTTCC--ATTTTTCCGAAT
63 TCAACGCCAAAAAGATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTTCCGAAT
* * *** *
48996 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGT-TTTACAAATCCTTAAATCCAATGCG
128 TAATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTG
* * * * * * *
49060 GCTGAGATTTGCTTCGATAAATATAGATATTTCAAGGAGTCTTTACGACAAAAATCATTCAAAGC
193 GCTGAGATTTGGTTAGATGAATATAGATATTTCAAAGAGTCTTTATGCCAAAAATCATTCAAAAC
* * * * * *
49125 TGAG-CTAGGGCCCTGGAACGCATTTTTAGCC-AAAACGGTGATGAGTAAACAATTTCGACTAAA
258 TGAGTCGA-GGCCCCGAAACGCGTTTTTAGCCAAAAACTGTGATG-GTAGAC-A--T-GA-T---
** * *
49188 ATTTTG-CAAAAATTGACCCGAAAATTTTTTCCTCAATTCTTTGCCACAATACTCAGAAAAAATA
313 -TTCGGCCAAAAATTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTC-GAAAAAATA
*
49252 TATAATCCAACGCCAAAAAAATTAAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTT
376 TATAATTCAACGCCAAAAAAATTAAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTT
* *
49317 TCCAAATTTATTTCGAATTAAATCGAAATAAGAATCAGATGCTCGTAAAAAGAAATCTTTTAATC
441 TCCAAATTTATTTTGAATTAAATCGAAACAAGAATCAGATGCTCGTAAAAAGAAATCTTTTAATC
* *
49382 CATTGTGGCTGAGACTTGGTTAGATAGATATAGATATTTCAAAGAGTATTTCTGCCAAAAATCAT
506 CATTGTGGCTGAGATTTGGTTAGATAGATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATCAT
* *
49447 TCAAAACTGAGTCAAGCCCCGAAATGCGTTTTGAGCCAAAAACCTGTGATGGTTAGTACATGATA
571 TCAAAACTGAGTCAAGCCCCGAAACGCGTTTTTAGCCAAAAACC-GTGATGGTTAGTACATGATA
49512 TCGGCCA
635 TCGGCCA
*
49519 AAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTTGCCACAATACTCATAAAAAATATATAATTC
1 AAAACTGACCCGAAAAGTTTTTCCTCAA-TTTTTTGCCAAAATACTCATAAAAAATATATAATTC
* * *
49584 AATGCC-AAAAGAGTTGAAGGG-TTTTCATGCTACTAATATCGTTTTTCCTTTTATTTTCCGAAT
65 AACGCCAAAAAGA-TTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTT-TTTTCCGAAT
* * *
49647 TTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTTAATCCATTGTG
128 TAATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTG
*
49712 GCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCAT-CCAAAAATCATTCAAAA
193 GCTGAGATTTGGTTAGATGAATATAGATATTTCAAAGAGTCTTT-ATGCCAAAAATCATTCAAAA
49776 CTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACTGTGATGGTTAGTACATGATTTCGGCC
257 CTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACTGTGATGG-TAG-ACATGATTTCGGCC
*
49841 AAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCGAAAAAATATATAATTCA
320 AAAAATTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCGAAAAAATATATAATTCA
* *
49906 ACGCCAAAAAAATTAAAGGGTTTTTCACGCCTCTAATATCG-TTTTCCTTTTTTTTTTCTAAATT
385 ACGCCAAAAAAATTAAAGGGTTTTTCACGCTTCTAATATCGTTTTTCC-TTTTTTTTTCCAAATT
49970 TATTTTGAATTAAATCGAAACAAGAATCAGATGCTCGTAAAAAGAAATCTTTTAATCCATTGTGG
449 TATTTTGAATTAAATCGAAACAAGAATCAGATGCTCGTAAAAAGAAATCTTTTAATCCATTGTGG
50035 CTGAGATTTGGTTAGATAGATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATCATTCAAAACT
514 CTGAGATTTGGTTAGATAGATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATCATTCAAAACT
* *
50100 GAGTCGAGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATGATTTCGGCCA
579 GAGTCAAGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATGATATCGGCCA
* * * *
50163 AATACTGACCCGAAAAGTTTTTCCTCAATTTTTCGCCACAATACTTATAAAAAATATATAATTCA
1 AAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCAAAATACTCATAAAAAATATATAATTCA
*
50228 ACGCCAAAGAAG-TTGAAGGGTTTTTCACGCTTCAAATATCGTTTTTCCTCTTTATTTTCCGAAT
66 ACGCCAAA-AAGATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCT-TTT-TTTTCCGAAT
* * *
50292 TTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTTAATCCATTGTG
128 TAATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTG
* *
50357 GCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATCATTCAAAAC
193 GCTGAGATTTGGTTAGATGAATATAGATATTTCAAAGAGTCTTTATGCCAAAAATCATTCAAAAC
*
50422 TGAGTGGAGGCCCCGAAACGCGTTTTTAGCCAAAAACTG
258 TGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACTG
50461 GGCAAAATGC
Statistics
Matches: 1399, Mismatches: 141, Indels: 91
0.86 0.09 0.06
Matches are distributed among these distances:
630 11 0.01
631 61 0.04
632 41 0.03
633 60 0.04
634 6 0.00
635 67 0.05
636 5 0.00
642 2 0.00
643 48 0.03
644 87 0.06
645 416 0.30
646 87 0.06
647 8 0.01
648 85 0.06
649 67 0.05
650 181 0.13
651 49 0.04
652 99 0.07
653 17 0.01
654 2 0.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (641 bp):
AAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCAAAATACTCATAAAAAATATATAATTCA
ACGCCAAAAAGATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTTCCGAATTAA
TTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCT
GAGATTTGGTTAGATGAATATAGATATTTCAAAGAGTCTTTATGCCAAAAATCATTCAAAACTGA
GTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACTGTGATGGTAGACATGATTTCGGCCAAAAAT
TGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCGAAAAAATATATAATTCAACGCCA
AAAAAATTAAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTTTTTTTCCAAATTTATTTTG
AATTAAATCGAAACAAGAATCAGATGCTCGTAAAAAGAAATCTTTTAATCCATTGTGGCTGAGAT
TTGGTTAGATAGATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATCATTCAAAACTGAGTCAA
GCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATGATATCGGCCA
Found at i:52079 original size:19 final size:19
Alignment explanation
Indices: 52041--52128 Score: 52
Period size: 19 Copynumber: 4.3 Consensus size: 19
52031 GTGAGGGAGG
*
52041 AAGAAAGAAAAAAAGGAAA
1 AAGAAAGAAAAAAAGAAAA
* *
52060 AAGAAAGAAGAAGAGAAAA
1 AAGAAAGAAAAAAAGAAAA
*
52079 ATGAATA-AAGAAAAAGAATTAAA
1 AAGAA-AGAA-AAAAAG-A--AAA
* *
52102 AAAAAAGGAAAAAAGAAGAA
1 AAGAAAGAAAAAAAGAA-AA
52122 GAAGAAA
1 -AAGAAA
52129 ACACGTTAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 14
0.68 0.13 0.19
Matches are distributed among these distances:
19 23 0.45
20 7 0.14
21 7 0.14
22 7 0.14
23 7 0.14
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.05
Consensus pattern (19 bp):
AAGAAAGAAAAAAAGAAAA
Found at i:52092 original size:14 final size:13
Alignment explanation
Indices: 52063--52124 Score: 52
Period size: 14 Copynumber: 4.5 Consensus size: 13
52053 AAGGAAAAAG
*
52063 AAAGAAGAAGAGAA
1 AAAGAATAA-AGAA
52077 AAATGAATAAAGAA
1 AAA-GAATAAAGAA
*
52091 AAAGAATTAAAAAA
1 AAAGAA-TAAAGAA
*
52105 AAAGGAAAAAAGAA
1 AAA-GAATAAAGAA
*
52119 GAAGAA
1 AAAGAA
52125 GAAAACACGT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
13 6 0.15
14 26 0.65
15 8 0.20
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.06
Consensus pattern (13 bp):
AAAGAATAAAGAA
Found at i:52095 original size:28 final size:27
Alignment explanation
Indices: 52048--52129 Score: 80
Period size: 28 Copynumber: 3.1 Consensus size: 27
52038 AGGAAGAAAG
52048 AAAAAAAGG-AAAAAG--AAAGAAGAA
1 AAAAAAAGGAAAAAAGAAAAAGAAGAA
* * * *
52072 GAGAAAAATGAATAAAGAAAAAGAATTAA
1 -AAAAAAAGGAAAAAAGAAAAAGAA-GAA
*
52101 AAAAAAAGGAAAAAAGAAGAAGAAGAA
1 AAAAAAAGGAAAAAAGAAAAAGAAGAA
52128 AA
1 AA
52130 CACGTTAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
25 7 0.16
26 5 0.11
27 4 0.09
28 26 0.59
29 2 0.05
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.05
Consensus pattern (27 bp):
AAAAAAAGGAAAAAAGAAAAAGAAGAA
Found at i:52103 original size:25 final size:24
Alignment explanation
Indices: 52040--52129 Score: 74
Period size: 25 Copynumber: 3.5 Consensus size: 24
52030 AGTGAGGGAG
52040 GAAGAAAGAAAAAAAGGAAAAAGAAA
1 GAAG-AAG-AAAAAAGGAAAAAGAAA
*
52066 GAAGAAGAGAAAAATGAATAAAGAAAAA
1 GAAGAAGA-AAAAAGGAA-AAAG--AAA
* *
52094 GAATTAAAAAAAAAGGAAAAA-AGAA
1 GAA-GAAGAAAAAAGGAAAAAGA-AA
52119 GAAGAAGAAAA
1 GAAGAAGAAAA
52130 CACGTTAAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
24 8 0.15
25 16 0.31
26 8 0.15
27 3 0.06
28 14 0.27
29 3 0.06
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.04
Consensus pattern (24 bp):
GAAGAAGAAAAAAGGAAAAAGAAA
Found at i:52141 original size:28 final size:25
Alignment explanation
Indices: 52110--52161 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 25
52100 AAAAAAAAGG
52110 AAAAAAGAAGAAGAAGAAAACACGTTA
1 AAAAAAG-AG-AGAAGAAAACACGTTA
52137 AAAAAAGAGAGAAGAAAACACGTTA
1 AAAAAAGAGAGAAGAAAACACGTTA
52162 CTTACTGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 16 0.64
26 2 0.08
27 7 0.28
ACGTcount: A:0.65, C:0.08, G:0.19, T:0.08
Consensus pattern (25 bp):
AAAAAAGAGAGAAGAAAACACGTTA
Found at i:53253 original size:324 final size:321
Alignment explanation
Indices: 52353--53576 Score: 1897
Period size: 324 Copynumber: 3.8 Consensus size: 321
52343 AGCATTTTGC
* *
52353 CCAAAAACTGCGATGGTTAGTACATGATTTC-GCCTAAAAACTGACCCGAAAAGTTTTTCCTCAA
1 CCAAAAACCGTGATGGTTAGTACATGATTTCGGCC-AAAAACTGACCCGAAAAGTTTTTCCTCAA
* * *
52417 TTTTTTGCCACAATACTCATAAAAAAATATATAATCCAATGCCAAAAAAAACGAAGGGTTTTTCA
65 TTTTTTGCCACAATACTCA-GAAAAAATATATAATTCAACGCC-AAAAAAACGAAGGGTTTTTCA
** * *
52482 CATTTCTAATATCGTTTTTCCTTTTTTTTTCCGAATTTATTTTGAATTAAATCGAAACAAGATTC
128 CGCTTCTAATATCGTTTTTCCTTTTTTTTCCCGAATTTATTTCGAATTAAATCGAAACAAGATTC
* * *
52547 AAATGCTCGTAAAAACAAATCCTTTAATCCATTATGGTTGAGATTTGGTTAGATGAATATAGATA
193 AGATGCTCGTAAAAACAAATCCTTTAATCCATTATGGCTGAGATTTGGTTAGATGGATATAGATA
* *
52612 TTTCAAAGGGTCCTTTTGCCAAAAATCATTCAAAACTGAGTCGAGGCGCCGAAACGCGTTTTTAG
258 TTTCAAAGAGTCTTTTTGCCAAAAATCATTCAAAACTGAGTCGAGGC-CCGAAACGCGTTTTTAG
* *
52677 CCAAAAACCGGGATGGTTAGTACATGATTTCGGCCAAAAACTGACCCGAAAATTTTTTCCTCAAT
1 CCAAAAACCGTGATGGTTAGTACATGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAAT
* *
52742 TTTTTGCCACAATACTCAG-AAAAATATACAATTTAACGCCAAAAAATA-GAAGGGTTTTTCACG
66 TTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAA-ACGAAGGGTTTTTCACG
*
52805 CTTC-AATATAG-TTTTCC-TTTTTTT-CCGAATTTATTTCGAATTAAATCGAAACAAGATTCAG
130 CTTCTAATATCGTTTTTCCTTTTTTTTCCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAG
* *
52866 ATGCTCGTACAAACAAATCCTTTAATCCATTATGGCTGAGATTTGGTTCGATGGATATAGATATT
195 ATGCTCGTAAAAACAAATCCTTTAATCCATTATGGCTGAGATTTGGTTAGATGGATATAGATATT
* *
52931 TCAAAGAGTCTTTTTGCCAAAAATCATTCAAAATTGAGTTGAGGCCACGAAACGCGTTTTTAG
260 TCAAAGAGTCTTTTTGCCAAAAATCATTCAAAACTGAGTCGAGGCC-CGAAACGCGTTTTTAG
* *
52994 CC-AAAACCGTGATGGTTAGTACATGATTTCAGCAAAAAACTGACCCGAAAAGTTTTTCCTCAAT
1 CCAAAAACCGTGATGGTTAGTACATGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAA-
* *
53058 TTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGTCAAAAAAACCGAAGGGTTTTTCAC
65 TTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAA-CGAAGGGTTTTTCAC
53123 GCTTCTAATATCGTTTTTCCTTTTTTTTCCCGAATTTATTTCAGAATTAAATCGAAACAAGATTC
129 GCTTCTAATATCGTTTTTCCTTTTTTTTCCCGAATTTATTTC-GAATTAAATCGAAACAAGATTC
* *
53188 AGATGCTCGTAAAAACAAATCCTTTAATCCATTATAGCTGAGATTTGGTTCGATGGATATAGATA
193 AGATGCTCGTAAAAACAAATCCTTTAATCCATTATGGCTGAGATTTGGTTAGATGGATATAGATA
* * *
53253 TTTCAAAGAGACTTTCTGCCAAAAATCATTCAAAACTGAGTCGAGACCCCGAAACGCGTTTTTAG
258 TTTCAAAGAGTCTTTTTGCCAAAAATCATTCAAAACTGAGTCGAG-GCCCGAAACGCGTTTTTAG
* *
53318 CCAAAAACCGTGATGGTTAGTACATGATTTCGGCCAAAAACTGACCTGAAAAGTTCTTCCTCAAT
1 CCAAAAACCGTGATGGTTAGTACATGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAAT
* ***
53383 TTTTTGCCACAATACTCAGGAAAAATATATAATTCAACGCCAAAAAATTAAAGGGTATTTTCACG
66 TTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAACGAAGGGT-TTTTCACG
* * **
53448 CTTCTAATGTCGTTTTTCCTTTTTTTTCCCAAATTTATTTCGAATTAAATCGAAACAAGAAGCAG
130 CTTCTAATATCGTTTTTCCTTTTTTTTCCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAG
* *
53513 ATGCTCGTAAAAACAAATCCTTTAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAAATAT
195 ATGCTCGTAAAAACAAATCCTTTAATCCATTATGGCTGAGATTTGGTTAGATGGATATAGATAT
53577 ATAATTCAAC
Statistics
Matches: 830, Mismatches: 55, Indels: 31
0.91 0.06 0.03
Matches are distributed among these distances:
316 58 0.07
317 176 0.21
318 30 0.04
319 25 0.03
320 12 0.01
321 29 0.03
322 25 0.03
323 101 0.12
324 312 0.38
325 62 0.07
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.33
Consensus pattern (321 bp):
CCAAAAACCGTGATGGTTAGTACATGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAAT
TTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAACGAAGGGTTTTTCACGC
TTCTAATATCGTTTTTCCTTTTTTTTCCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGA
TGCTCGTAAAAACAAATCCTTTAATCCATTATGGCTGAGATTTGGTTAGATGGATATAGATATTT
CAAAGAGTCTTTTTGCCAAAAATCATTCAAAACTGAGTCGAGGCCCGAAACGCGTTTTTAG
Found at i:53589 original size:166 final size:168
Alignment explanation
Indices: 53405--53744 Score: 524
Period size: 168 Copynumber: 2.0 Consensus size: 168
53395 TACTCAGGAA
*
53405 AAATATATAATTCAACGCC-AAAAAATTAAAGGGTATTTTCACGCTTCTAATGTCGTTTTTCC-T
1 AAATATATAATTCAACGCCAAAAAAATTAAAGGGT-TTTTCACGCTTCTAATATCGTTTTTCCTT
*
53468 T-TTTTTTCCCAAATTTATTTCGAATTAAATCGAAACAAGAAGCAGATGCTCGTAAAAACAAATC
65 TATTTTTTCCCAAATTTATTTCGAATTAAATCGAAACAAGAAGCAAATGCTCGTAAAAACAAATC
*
53532 CTTTAATCCATTGTGGCTGAGATTTGGTTAGATGGATAT
130 CTTTAATCCATTGTGACTGAGATTTGGTTAGATGGATAT
* * *
53571 AAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGTTTCTAATATTGTTTTTCCTTT
1 AAATATATAATTCAACGCCAAAAAAATTAAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTT
* * * * **
53636 ATTTTTTTCCGAATTTATTTCGATTTAAATCGAAACAATATTCAAATGCTCGTAAAAACAAATCC
66 ATTTTTTCCCAAATTTATTTCGAATTAAATCGAAACAAGAAGCAAATGCTCGTAAAAACAAATCC
*
53701 TTTAATTCATTGTGACTGAGATTTGGTTAGATGGATAT
131 TTTAATCCATTGTGACTGAGATTTGGTTAGATGGATAT
*
53739 AGATAT
1 AAATAT
53745 TTCAAAGAGA
Statistics
Matches: 157, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
166 43 0.27
167 16 0.10
168 98 0.62
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (168 bp):
AAATATATAATTCAACGCCAAAAAAATTAAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTT
ATTTTTTCCCAAATTTATTTCGAATTAAATCGAAACAAGAAGCAAATGCTCGTAAAAACAAATCC
TTTAATCCATTGTGACTGAGATTTGGTTAGATGGATAT
Found at i:53594 original size:641 final size:640
Alignment explanation
Indices: 52364--53578 Score: 1961
Period size: 641 Copynumber: 1.9 Consensus size: 640
52354 CAAAAACTGC
*
52364 GATGGTTAGTACATGATTTCGCCTAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACA
1 GATGGTTAGTACATGATTTCGCCAAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACA
*
52429 ATACTCATAAAAAAATATATAATCCAATGCCAAAAAAAACGAAGGGTTTTTCACATTTCTAATAT
66 ATACTCATAAAAAAATATATAATCCAATGCCAAAAAAAACGAAGGGTTTTTCACACTTCTAATAT
* *
52494 CGTTTTTCCTTTTTTTTTCCGAATTTATTTTGAATTAAATCGAAACAAGATTCAAATGCTCGTAA
131 CGTTTTTCCTTTTTTTTCCCGAATTTATTTAGAATTAAATCGAAACAAGATTCAAATGCTCGTAA
* * * *
52559 AAACAAATCCTTTAATCCATTATGGTTGAGATTTGGTTAGATGAATATAGATATTTCAAAGGGTC
196 AAACAAATCCTTTAATCCATTATAGCTGAGATTTGGTTAGATGAATATAGATATTTCAAAGAGTA
* *
52624 CTTTTGCCAAAAATCATTCAAAACTGAGTCGAGGCGCCGAAACGCGTTTTTAGCCAAAAACCGGG
261 CTTTTGCCAAAAATCATTCAAAACTGAGTCGAGACCCCGAAACGCGTTTTTAGCCAAAAACCGGG
* *
52689 ATGGTTAGTACATGATTTCGGCCAAAAACTGACCCGAAAATTTTTTCCTCAATTTTTTGCCACAA
326 ATGGTTAGTACATGATTTCGGCCAAAAACTGACCCGAAAAGTTCTTCCTCAATTTTTTGCCACAA
*
52754 TACTCAGAAAAATATACAATTTAACGCCAAAAAATAGAAGGGTTTTTCACGCTTCAATATAGTTT
391 TACTCAGAAAAATATACAATTCAACGCCAAAAAATAGAAGGGTTTTTCACGCTTCAATATAGTTT
* ** *
52819 TCCTTTTTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTACAAACAAAT
456 TCCTTTTTTTCCAAATTTATTTCGAATTAAATCGAAACAAGAAGCAGATGCTCGTAAAAACAAAT
* * ****
52884 CCTTTAATCCATTATGGCTGAGATTTGGTTCGATGGATATAGATATTTCAAAGAGTCTTTTTGCC
521 CCTTTAATCCATTATGGCTGAGATTTGGTTAGATGGATATAGATATATCAAAGAGTCTCAACGCC
52949 AAAAATCATTCAAAATTGAGTTGAGGCCACGAAACGCGTTTTTAGCCAAAACCGT
586 AAAAATCATTCAAAATTGAGTTGAGGCCACGAAACGCGTTTTTAGCCAAAACCGT
53004 GATGGTTAGTACATGATTTCAG-CAAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTTGCCA
1 GATGGTTAGTACATGATTTC-GCCAAAAAACTGACCCGAAAAGTTTTTCCTCAA-TTTTTTGCCA
* * * * *
53068 CAATACTCA-GAAAAAATATATAATTCAATGTCAAAAAAACCGAAGGGTTTTTCACGCTTCTAAT
64 CAATACTCATAAAAAAATATATAATCCAATGCCAAAAAAAACGAAGGGTTTTTCACACTTCTAAT
*
53132 ATCGTTTTTCCTTTTTTTTCCCGAATTTATTTCAGAATTAAATCGAAACAAGATTCAGATGCTCG
129 ATCGTTTTTCCTTTTTTTTCCCGAATTTATTT-AGAATTAAATCGAAACAAGATTCAAATGCTCG
* *
53197 TAAAAACAAATCCTTTAATCCATTATAGCTGAGATTTGGTTCGATGGATATAGATATTTCAAAGA
193 TAAAAACAAATCCTTTAATCCATTATAGCTGAGATTTGGTTAGATGAATATAGATATTTCAAAGA
53262 G-ACTTTCTGCCAAAAATCATTCAAAACTGAGTCGAGACCCCGAAACGCGTTTTTAGCCAAAAAC
258 GTACTTT-TGCCAAAAATCATTCAAAACTGAGTCGAGACCCCGAAACGCGTTTTTAGCCAAAAAC
* *
53326 CGTGATGGTTAGTACATGATTTCGGCCAAAAACTGACCTGAAAAGTTCTTCCTCAATTTTTTGCC
322 CGGGATGGTTAGTACATGATTTCGGCCAAAAACTGACCCGAAAAGTTCTTCCTCAATTTTTTGCC
*
53391 ACAATACTCAGGAAAAATATATAATTCAACGCCAAAAAATTA-AAGGGTATTTTCACGCTTCTAA
387 ACAATACTCA-GAAAAATATACAATTCAACGCCAAAAAA-TAGAAGGGT-TTTTCACGCTTC-AA
* *
53455 TGTCGTTTTTCCTTTTTTTTCCCAAATTTATTTCGAATTAAATCGAAACAAGAAGCAGATGCTCG
448 TATAG-TTTTCC-TTTTTTT-CCAAATTTATTTCGAATTAAATCGAAACAAGAAGCAGATGCTCG
* *
53520 TAAAAACAAATCCTTTAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAAATATAT
510 TAAAAACAAATCCTTTAATCCATTATGGCTGAGATTTGGTTAGATGGATATAGATATAT
53579 AATTCAACGC
Statistics
Matches: 530, Mismatches: 34, Indels: 15
0.92 0.06 0.03
Matches are distributed among these distances:
640 134 0.25
641 237 0.45
642 32 0.06
643 14 0.03
644 5 0.01
645 6 0.01
646 7 0.01
647 95 0.18
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.33
Consensus pattern (640 bp):
GATGGTTAGTACATGATTTCGCCAAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACA
ATACTCATAAAAAAATATATAATCCAATGCCAAAAAAAACGAAGGGTTTTTCACACTTCTAATAT
CGTTTTTCCTTTTTTTTCCCGAATTTATTTAGAATTAAATCGAAACAAGATTCAAATGCTCGTAA
AAACAAATCCTTTAATCCATTATAGCTGAGATTTGGTTAGATGAATATAGATATTTCAAAGAGTA
CTTTTGCCAAAAATCATTCAAAACTGAGTCGAGACCCCGAAACGCGTTTTTAGCCAAAAACCGGG
ATGGTTAGTACATGATTTCGGCCAAAAACTGACCCGAAAAGTTCTTCCTCAATTTTTTGCCACAA
TACTCAGAAAAATATACAATTCAACGCCAAAAAATAGAAGGGTTTTTCACGCTTCAATATAGTTT
TCCTTTTTTTCCAAATTTATTTCGAATTAAATCGAAACAAGAAGCAGATGCTCGTAAAAACAAAT
CCTTTAATCCATTATGGCTGAGATTTGGTTAGATGGATATAGATATATCAAAGAGTCTCAACGCC
AAAAATCATTCAAAATTGAGTTGAGGCCACGAAACGCGTTTTTAGCCAAAACCGT
Found at i:53747 original size:491 final size:490
Alignment explanation
Indices: 53081--54067 Score: 1561
Period size: 491 Copynumber: 2.0 Consensus size: 490
53071 TACTCAGAAA
* *
53081 AAATATATAATTCAATGTCAAAAAAACCGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTT
1 AAATATATAATTCAACGCCAAAAAAACCGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTT
*
53146 TTTTTCCCGAATTTATTTCAGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT
66 TTTTTCCCGAATTTATTTCAGAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCT
*
53211 TTAATCCATTATAGCTGAGATTTGGTTCGATGGATATAGATATTTCAAAGAGACTTTCTGCCAAA
131 TTAATCCATTATAGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGACTTTCTGCCAAA
* * * *
53276 AATCATTCAAAACTGAGTCGAGACCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTAC
196 AATCAGTCAAAACAGAGTCGAG-CCCCGAAACACGTTTTTAGCCAAAAACCGTGA-AGTTAGTAC
** * *
53341 ATGATTTCGGCCAAAAACTGACCTGAAAAGTTCTTCCTCAATTTTTTGCCACAATACTCAG-GAA
259 ATGATTTCGGCCAAAAACTGACCCCAAAAGTTCTTCCTCAATTTTTCGCCACAATACTCAGAAAA
* *
53405 AAATATATAATTCAACGCC-AAAAAATTAAAGGGTATTTTCACGCTTCTAATGTCGTTTTTCCTT
324 AAATATATAATTCAACGCCAAAAAAATTAAAGGGT-TTTTCACGCTTCTAATATCGTTTATCCTT
53469 TTT-TTTCCCAAATTTATTTCGAATTAAATCGAAACAAGAAGCAGATGCTCGTAAAAACAAATCC
388 TTTATTTCCCAAATTTATTTCGAATTAAATCGAAACAAGAAGCAGATGCTCGTAAAAACAAATCC
53533 TTTAATCCATTGTGGCTGAGATTTGGTTAGATGGATAT
453 TTTAATCCATTGTGGCTGAGATTTGGTTAGATGGATAT
** * *
53571 AAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGTTTCTAATATTGTTTTTCCTTT
1 AAATATATAATTCAACGCCAAAAAAACCGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCC-TT
* * *
53636 ATTTTTTTCCGAATTTATTTC-GATTTAAATCGAAACAATATTCAAATGCTCGTAAAAACAAATC
65 -TTTTTTCCCGAATTTATTTCAGAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATC
* *
53700 CTTTAATTCATTGT-GACTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGACTTTCTGCC
129 CTTTAATCCATTATAG-CTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGACTTTCTGCC
* * *
53764 AAAAATCAGTCAAAACAGAGTCGAGCCTCGAAACACGTTTTTAGCCTAAAACCGTTAAGTTAGTA
193 AAAAATCAGTCAAAACAGAGTCGAGCCCCGAAACACGTTTTTAGCCAAAAACCGTGAAGTTAGTA
* * *
53829 CATGATTTCGGCGAAAAACTGACCCCAAAAGTTTTTCTTCAATTTTTCGCCACAATACTCAGAAA
258 CATGATTTCGGCCAAAAACTGACCCCAAAAGTTCTTCCTCAATTTTTCGCCACAATACTCAGAAA
* *
53894 AAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCATGCTTCTAATATCGTTTATCCTT
323 AAAATATATAATTCAACGCCAAAAAAATTAAAGGGTTTTTCACGCTTCTAATATCGTTTATCCTT
* * **
53959 TTTATTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCC
388 TTTATTTCCCAAATTTATTTCGAATTAAATCGAAACAAGAAGCAGATGCTCGTAAAAACAAATCC
54024 TTTAATCCATTGTGGCTGAGATTTGGTTAGATGGATAT
453 TTTAATCCATTGTGGCTGAGATTTGGTTAGATGGATAT
*
54062 AGATAT
1 AAATAT
54068 TTCAAAGAGT
Statistics
Matches: 455, Mismatches: 36, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
489 63 0.14
490 135 0.30
491 238 0.52
492 19 0.04
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (490 bp):
AAATATATAATTCAACGCCAAAAAAACCGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTT
TTTTTCCCGAATTTATTTCAGAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCT
TTAATCCATTATAGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGACTTTCTGCCAAA
AATCAGTCAAAACAGAGTCGAGCCCCGAAACACGTTTTTAGCCAAAAACCGTGAAGTTAGTACAT
GATTTCGGCCAAAAACTGACCCCAAAAGTTCTTCCTCAATTTTTCGCCACAATACTCAGAAAAAA
ATATATAATTCAACGCCAAAAAAATTAAAGGGTTTTTCACGCTTCTAATATCGTTTATCCTTTTT
ATTTCCCAAATTTATTTCGAATTAAATCGAAACAAGAAGCAGATGCTCGTAAAAACAAATCCTTT
AATCCATTGTGGCTGAGATTTGGTTAGATGGATAT
Found at i:54207 original size:324 final size:324
Alignment explanation
Indices: 53571--55420 Score: 2553
Period size: 323 Copynumber: 5.7 Consensus size: 324
53561 AGATGGATAT
* *
53571 AAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGTTTCTAATATTGTTTTTCCTTT
1 AAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTT
* * * *
53636 ATTTTTTTCCGAATTTATTTCGATTTAAATCGAAACAATATTCAAATGCTCGTAAAAACAAATCC
66 -TTATTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCC
* * *
53701 TTTAATTCATTGTGACTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGACTTTCTGCCAA
130 TTTAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCAA
* * * * * *
53766 AAATCAGTCAAAACAGAGTCGA-GCCTCGAAACACGTTTTTAGCCTAAAACCGTTA-AGTTAGTA
195 AAATCAGTCAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTA
* * * *
53829 CATGATTTCGGCGAAAAACTGACCCCAAAAGTTTTTCTTCAATTTTTCGCCACAATACTCAGAAA
260 CATGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCAG-AA
53894 A
324 A
* *
53895 AAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCATGCTTCTAATATCGTTTATCCTTT
1 AAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTT
53960 TTATTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT
66 TTATTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT
54025 TTAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCAAA
131 TTAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCAAA
54090 AATCAGTCAAAACTGAGTCGA-GCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTAC
196 AATCAGTCAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTAC
*
54154 ATGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCTGAAA
261 ATGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCAGAAA
* * * *
54218 AAATATATAATTTAACGCCAAGAAAATAGAAGGGTTTTTCACGCTTCAAATATCGTTTTTCCTTT
1 AAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTT
54283 TT-TTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT
66 TTATTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT
54347 TTAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCAAA
131 TTAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCAAA
* *
54412 AATCATTCTAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTAC
196 AATCAGTCAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTAC
* * *
54477 ATGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTCGCCACAATACTTATAAA
261 ATGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCAGAAA
* * * * *
54541 AAATATTTAATTCAACGCCAAAGAAGTTGAAGGGTTTTTCACGCTTCAAATATCGTTTTTCCTCT
1 AAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTT
*
54606 TTATTTTCCAAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT
66 TTATTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT
*
54671 TTAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCCGCCAAA
131 TTAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCAAA
* * * *
54736 AATCATTCAAAACTAAGTCGAGGCCCCGAAACACGTGTTTAGCCAAAAACCGTGATGGTTAGTAC
196 AATCAGTCAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTAC
* * * ** * * *
54801 ATGATTTCGGCTAAAAACTGACCCGAAGAGTTTTTTCTCTGTTTTTTG-CAAAATATTTAGAAAA
261 ATGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCAG-AAA
* * * * *
54865 AATATATATAATTCAACACCAAAAAGATTGACGGGCTTTTCACGCTTCCAATATCAGTTTTT--T
1 AA-ATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATC-GTTTTTCCT
** * * * * * *
54928 CATT-TTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCGGATTCTCTTAAAAACAAATT
64 TTTTATTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATC
* * * * * ** * *
54992 C-TTATATCCAATGAGGCTGAGATTTGATTCGTTAAATATAGATATTTTC-AGGAGTCTTTATGC
129 CTTTA-ATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATA-TTTCAAAGAGTCTTTCTGC
* * * * * * *
55055 CAAAAACCA-TGCAAAACTGAGACGAGTCCCTGAAACGCATTTTTAGCCAAAAACCATGATGGAT
192 CAAAAATCAGT-CAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTT
* * * * ** * *
55119 AGTACACGATTTCAGCTAAAAACTTATTCGAAAAGTTTTTACTTAATTTTTTGCCACAATACTCA
256 AGTACATGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCA
55184 GAAA
321 GAAA
* * *
55188 AAATATATAATTTAACGCCAAAAAAATTGAAGAGTTTTTCGCGCTTCTAATATCGTTTTTTCCAT
1 AAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCG-TTTTTCC-T
*
55253 TTTTA----CCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTC-TCAAAAACAAAT
64 TTTTATTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGT-AAAAACAAAT
* * * * * * *
55313 CCTTAAATCCAATGTGGCTGAGATTTCGTTAGATAGATATAGATATTTCAAGGAGTTTTTATGCC
128 CCTTTAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCC
* ** * **
55378 AAAAACCACACAAAACTGAGACGAGGCCCTAAAACGCGTTTTT
193 AAAAATCAGTCAAAACTGAGTCGAGGCCCCGAAACGCGTTTTT
55421 T
Statistics
Matches: 1376, Mismatches: 131, Indels: 40
0.89 0.08 0.03
Matches are distributed among these distances:
321 6 0.00
322 335 0.24
323 607 0.44
324 375 0.27
325 47 0.03
326 6 0.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.33
Consensus pattern (324 bp):
AAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTT
TTATTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT
TTAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCAAA
AATCAGTCAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTAC
ATGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCAGAAA
Found at i:55074 original size:647 final size:644
Alignment explanation
Indices: 53571--55406 Score: 2533
Period size: 647 Copynumber: 2.8 Consensus size: 644
53561 AGATGGATAT
* * *
53571 AAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGTTTCTAATATTGTTTTTCCTTT
1 AAATATATAATTCAACGCC-AAAAAATTGAAGGGTTTTTCACGCTTCAAATATCG-TTTT--TTT
* * *
53636 ATTTTTTTCCGAATTTATTTCGATTTAAATCGAAACAATATTCAAATGCTCGTAAAAACAAATCC
62 A-TTTTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCC
* * *
53701 TTTAATTCATTGTGACTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGACTTTCTGCCAA
126 TTTAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCAA
* * * * * *
53766 AAATCA-GTCAAAACAGAGTCGA-GCCTCGAAACACGTTTTTAGCCTAAAACCGTTA-AGTTAGT
191 AAATCATG-CAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGT
* * *
53828 ACATGATTTCGGCGAAAAACTGACCCCAAAAGTTTTTCTTCAATTTTTCGCCACAATACTCAGAA
255 ACATGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTCGCCACAATACTCA-AA
* *
53893 AAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCATGCTTCTAATATCGTTTATCCT
319 AAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCT
*
53958 TTTTATTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATC
384 CTTTATTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATC
54023 CTTTAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCA
449 CTTTAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCA
* * *
54088 AAAATCAGTCAAAACTGAGTCGA-GCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGT
514 AAAATCACTCAAAACTGAGTCGAGGCCCCGAAACACGTGTTTAGCCAAAAACCGTGATGGTTAGT
*
54152 ACATGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCTGAA
579 ACATGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCAAAATACTCTGAA
54217 A
644 A
* * *
54218 AAATATATAATTTAACGCCAAGAAAATAGAAGGGTTTTTCACGCTTCAAATATCGTTTTTCCTTT
1 AAATATATAATTCAACGCCAA-AAAATTGAAGGGTTTTTCACGCTTCAAATATCGTTTTT--TTA
54283 TTTTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTT
63 TTTTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTT
54348 TAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCAAAA
128 TAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCAAAA
* *
54413 ATCATTCTAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACA
193 ATCATGCAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACA
* *
54478 TGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTCGCCACAATACTTATAAAAA
258 TGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTCGCCACAATACTCAAAAAAA
* * * *
54543 ATATTTAATTCAACGCCAAAGAAGTTGAAGGGTTTTTCACGCTTCAAATATCGTTTTTCCTCTTT
323 ATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTCTTT
*
54608 ATTTTCCAAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTT
388 ATTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTT
*
54673 AATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCCGCCAAAAA
453 AATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCAAAAA
* *
54738 TCATTCAAAACTAAGTCGAGGCCCCGAAACACGTGTTTAGCCAAAAACCGTGATGGTTAGTACAT
518 TCACTCAAAACTGAGTCGAGGCCCCGAAACACGTGTTTAGCCAAAAACCGTGATGGTTAGTACAT
* * * ** *
54803 GATTTCGGCTAAAAACTGACCCGAAGAGTTTTTTCTCTGTTTTTTG-CAAAATA-TTTAGAAAA
583 GATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCAAAATACTCT-G-AAA
* * * * *
54865 AATATATATAATTCAACACCAAAAAGATTGACGGGCTTTTCACGCTTCCAATATCAGTTTTTTCA
1 AA-ATATATAATTCAACGCCAAAAA-ATTGAAGGGTTTTTCACGCTTCAAATATC-GTTTTTTTA
* * * * * *
54930 TTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCGGATTCTCTTAAAAACAAATTC-T
63 TTTTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTT
* * * * * ** * *
54994 TATATCCAATGAGGCTGAGATTTGATTCGTTAAATATAGATATTTTC-AGGAGTCTTTATGCCAA
128 TA-ATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATA-TTTCAAAGAGTCTTTCTGCCAA
* * * * * * *
55058 AAACCATGCAAAACTGAGACGAGTCCCTGAAACGCATTTTTAGCCAAAAACCATGATGGATAGTA
191 AAATCATGCAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTA
* * * * ** * * * *
55123 CACGATTTCAGCTAAAAACTTATTCGAAAAGTTTTTACTTAATTTTTTGCCACAATACTCAGAAA
256 CATGATTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTCGCCACAATACTCAAAAA
* * * * *
55188 AAATATATAATTTAACGCCAAAAAAATTGAAGAGTTTTTCGCGCTTCTAATATCGTTTTTTC-CA
321 AAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTCT
* *
55252 TT-TTTACCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTC-TCAAAAACAAATCC
386 TTATTTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGT-AAAAACAAATCC
* * * * * * *
55315 TTAAATCCAATGTGGCTGAGATTTCGTTAGATAGATATAGATATTTCAAGGAGTTTTTATGCCAA
450 TTTAATCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCAA
* * *
55380 AAACCACACAAAACTGAGACGAGGCCC
515 AAATCACTCAAAACTGAGTCGAGGCCC
55407 TAAAACGCGT
Statistics
Matches: 1061, Mismatches: 113, Indels: 32
0.88 0.09 0.03
Matches are distributed among these distances:
644 2 0.00
645 277 0.26
646 258 0.24
647 472 0.44
648 46 0.04
649 6 0.01
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.33
Consensus pattern (644 bp):
AAATATATAATTCAACGCCAAAAAATTGAAGGGTTTTTCACGCTTCAAATATCGTTTTTTTATTT
TTTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTTAA
TCCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATC
ATGCAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATGA
TTTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTCGCCACAATACTCAAAAAAAATA
TATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTCTTTATT
TTCCGAATTTATTTCGAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTTAAT
CCATTGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAAGAGTCTTTCTGCCAAAAATCA
CTCAAAACTGAGTCGAGGCCCCGAAACACGTGTTTAGCCAAAAACCGTGATGGTTAGTACATGAT
TTCGGCCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCCAAAATACTCTGAAA
Done.