Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018143.1 Corchorus olitorius cultivar O-4 contig18176, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99225

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8832--9071
107
2.3
104
90
2
365
42
8
7
42
1.62
20860--20889
15
2.0
15
100
0
60
0
6
86
6
0.70
41199--41231
14
2.3
15
89
5
50
33
18
9
39
1.82
44320--44345
3
8.7
3
100
0
52
0
34
0
65
0.93
44386--44437
24
2.2
24
82
6
61
9
30
9
50
1.67
71710--71748
19
2.1
19
90
0
60
38
10
15
35
1.81
72239--72402
60
2.7
59
84
9
206
35
14
18
31
1.91
72303--72404
31
3.4
31
78
5
127
37
14
19
28
1.91
72270--72371
29
3.4
29
73
5
96
33
13
19
33
1.91
72288--72378
29
3.1
29
75
6
101
32
12
18
36
1.88
72446--72604
59
2.7
60
87
3
214
30
16
16
36
1.91
86596--86660
31
2.2
29
86
5
85
27
24
13
33
1.93
93382--93753
40
9.2
40
89
4
543
37
7
26
28
1.83
94608--94637
11
2.7
11
94
0
51
0
10
0
90
0.47
94608--94637
16
1.9
15
93
6
51
0
10
0
90
0.47
96072--97719
328
5.0
333
79
8
1575
37
14
15
32
1.88
96167--97721
668
2.3
658
81
7
1702
36
14
15
33
1.88
97476--99225
329
5.5
302
80
12
1354
36
16
15
31
1.90
97714--99225
329
4.6
330
89
3
2335
36
17
15
31
1.90
97714--99225
666
2.3
657
90
3
2381
36
17
15
31
1.90

Tables:   1

The End!