Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018144.1 Corchorus olitorius cultivar O-4 contig18177, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5164
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Found at i:708 original size:334 final size:337
Alignment explanation
Indices: 21--687 Score: 986
Period size: 334 Copynumber: 2.0 Consensus size: 337
11 AAAAACCGTG
* * * * * *
21 ACACGATTTCGG-TAAAATTTTGCAAAAAATTGATCCGAAAGAATTTTTTCCTCAAATTTTAACC
1 ACACAATTTCGGCAAAAAGTTTGCAAAAAATTGACCCGAAAGAATTTTTACATCAAATTTTAACC
*
85 GCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGAGCTTTTCACGCTTCTAAT
66 GCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGAGCTTTTCACGCTTCAAAT
*
150 ATCATTTTTTCAATTCTTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGT
131 ATCATTTTTTCAATTCTTTCCCGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGATCGT
* * *
215 AAAAATAAATCCACAAATCCATTGTGGCTTGATATTTGGGATGATCAATATAGATATTTCACTGA
196 AAAAACAAATCCACAAATCCATTGTGGCTTGAGATTTGGGATGATCAATATAGATATTTCAATGA
* * * * * *
280 GTCTTAGCGCCAAAAATCATACAAAACTGGGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACC
261 CTCTTAGCACCAAAAATCATACAAAACTGAGCCAGGGCCCCGGAACGCATTTTTAGCCAAAAACC
* * *
345 GTGATGGTTAGT
326 ATCACGGTTAGT
* *
357 ACACGATTTCGGCAAAAAGTTTGC-AAAAATTGACCCGAAAG-A-TTTTACATCAATTTTTAACC
1 ACACAATTTCGGCAAAAAGTTTGCAAAAAATTGACCCGAAAGAATTTTTACATCAAATTTTAACC
* * *
419 GCAATACTCGTTAAAAATATGTAATTCAACGCCAAAAAGATTGAAGAGTTTTTCACGCTTCAAAT
66 GCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGAGCTTTTCACGCTTCAAAT
* * *
484 TTCATTTTTTCAATTCTTTCCCGAATTAATTTCTAATTAAATAGAAACCAGATTCTGATGATCGT
131 ATCATTTTTTCAATTCTTTCCCGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGATCGT
* *
549 AAAAACAAATCCATAAATCCATTGTGGC-TGAGATTTGGGATGATGAATATAGATATTTCAATGA
196 AAAAACAAATCCACAAATCCATTGTGGCTTGAGATTTGGGATGATCAATATAGATATTTCAATGA
* *
613 CTCTTGGCACCAAAAATCATGA-AAAACTTAGCCAGGGCCCCGGAACGCATTTTTAGCCAAAAAC
261 CTCTTAGCACCAAAAATCAT-ACAAAACTGAGCCAGGGCCCCGGAACGCATTTTTAGCCAAAAAC
677 CATACACGGTT
325 CAT-CACGGTT
688 TCGGCTAAAA
Statistics
Matches: 298, Mismatches: 30, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
333 89 0.30
334 171 0.57
335 1 0.00
336 28 0.09
337 9 0.03
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.30
Consensus pattern (337 bp):
ACACAATTTCGGCAAAAAGTTTGCAAAAAATTGACCCGAAAGAATTTTTACATCAAATTTTAACC
GCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGAGCTTTTCACGCTTCAAAT
ATCATTTTTTCAATTCTTTCCCGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGATCGT
AAAAACAAATCCACAAATCCATTGTGGCTTGAGATTTGGGATGATCAATATAGATATTTCAATGA
CTCTTAGCACCAAAAATCATACAAAACTGAGCCAGGGCCCCGGAACGCATTTTTAGCCAAAAACC
ATCACGGTTAGT
Found at i:1239 original size:636 final size:638
Alignment explanation
Indices: 1--3050 Score: 1996
Period size: 636 Copynumber: 4.7 Consensus size: 638
*
1 TTTTTAGCCAAAAAACC-GTGACACGATTTCGG-TAAAATTTTGCAAAAAATTGATCCGAAAGAA
1 TTTTTAG-CAAAAAACCAGT-ACACGATTTCGGCTAAAATTTTGAAAAAAATTGATCCGAAAG-A
* ** **
64 TTTTTTCCTCAAATTTT--AACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATT
63 -TTTTTCCTCAATTTTTGGAA--AAAATACTAATAAAAAATATATAATTCAACGCCAAAAAGATT
* *
127 GAAGAGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTTTCCCGAATTAATTTCTAATTAAAT
125 GAAGGGCTTTTCACGCTTCTAATATC-GTTTTTC-A---------GAATTAATTTCTAATTAAAT
* * * * ** * ** **
192 CGAAACAAGATTCAGATGATCGTAAAAATAAATCCACAAATCCATTGTGG-CTTGATATTTGGGA
179 CAAAACAAGATACAGATGTTCGTAAAAACAAATCCTTAAATCCAATGTGGCCGAGAT-TTTGTTA
* * * ** * * * * *
256 TGATCAATATAGATATTTCACTGAGTCTTAGCGCCAAAAATCATACAAAACTGGGTCGGGGCCCC
243 -GATGAATATAAATATTACAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAG-CCGGGCCTC
* * * *
321 GGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCAAAAAGTTTGCAAAAA
306 GAAACGCGTTTTTAGCCGAAAACCATGATGGTTAGTACACGATTTCGGCAAAAATTTTGC---AA
* ** ** ** * *
386 TTGACCCGAAAG-ATTTTACATCAATTTTTAACCGCAATACTCGTTAAAAATATGTAATTCAACG
368 -T-ACCCGAAAGAATTTT-CCTCAATTTTTGGCCAAAATACTAATAAAAAATATATAATTCAACG
* * * * * * * * *
450 CCAAAAAGATTGAAGAGTTTTTCACGCTTCAAATTTCATTTTTTCAATTCTTTCCCGAATTAATT
430 CCAAAAAGATTAAAGGGCTTTTCACGCTTCTAATATCATATTTCCTATT-TTT-CTGAATTAATT
* * * * ** * *
515 TCTAATTAAATAGAAACCAGATTCTGATGATCGTAAAAACAAATCCATAAATCCATTGTGGCTGA
493 TCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTTTAAATCTAATGTGGCTGA
** * *
580 GA-TTTGGGATGATGAATATAGATATTTCAATG-ACTCTTGGCACCAAAAATCATGAAAAACTTA
558 GATTTTGTTA-GATGAATATAGATATTTCAA-GAACTCTTGGCACCAAAAATCATGTAAAACTGA
* *
643 GCCAGGGCCCCGGAACGCA
621 GCC-GGGCCCCAGAACGCG
* * * *
662 TTTTTAGCCAAAAACCA-TACACGGTTTCGGCTAAAATTTTGCAAAAAAATTGACCCGAGAGATT
1 TTTTTAGCAAAAAACCAGTACACGATTTCGGCTAAAATTTTG-AAAAAAATTGATCCGAAAGATT
* *
726 TTGCCTCAATTTTTGGAAAAAAAAATACTAATAAAAAATATATAATTCAACGCCAAAAAGACTGA
65 TTTCCTCAATTTTTGG---AAAAAATACTAATAAAAAATATATAATTCAACGCCAAAAAGATTGA
* *
791 TGGGGTTTTCACGCTTCTAATATCGTTTTT-AGAATTAATTTCTAATTAAATCAAAACAAGATAC
127 AGGGCTTTTCACGCTTCTAATATCGTTTTTCAGAATTAATTTCTAATTAAATCAAAACAAGATAC
* * * *
855 AGATGTTCGTAAAAACAAATCCTTAAATCCATTGTGGCCAAGATTTAGTTAGATGAATATAGATA
192 AGATGTTCGTAAAAACAAATCCTTAAATCCAATGTGGCCGAGATTTTGTTAGATGAATATAAATA
*
920 TTACAAGGAGTCTTGGCGCC-AAAATCATGC-AAACTGAGCCGGGACCTCGAAATGCG-TTTTAG
257 TTACAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGG-CCTCGAAACGCGTTTTTAG
* * * * * * *
982 CCGAAAACCATGATGGTTATTAAATGGTTTCGACTAAAATTTTGC-A-ACCCGAGAGAATTTTCC
321 CCGAAAACCATGATGGTTAGTACACGATTTCGGCAAAAATTTTGCAATACCCGAAAGAATTTTCC
* * *
1045 TCAATTTTTGGTCAAAATAGTAATAAAAAATATATAATTCAACGCCAAAAAGACTAAAGGGCTTT
386 TCAATTTTTGGCCAAAATACTAATAAAAAATATATAATTCAACGCCAAAAAGATTAAAGGGCTTT
* ** *
1110 TCACGGTTCTAATATCGGATTTCCTATTTTTCTGAATAAATTT-TAATTAAATCGAAACAAGATT
451 TCACGCTTCTAATATCATATTTCCTATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATT
* *
1174 CAGATGCTCGTAAAAACAAATCTTTAAATCTAATGTGGCTGGGATTTTTTTAGATGAATATAGAT
516 CAGATGCTCGTAAAAACAAATCTTTAAATCTAATGTGGCTGAGATTTTGTTAGATGAATATAGAT
* * * * *
1239 ATTTCAAGGAGTCTTGGCGCCAAAAATCATGTAAAACTGATGCCGGGCACCAGAACACG
581 ATTTCAAGAACTCTTGGCACCAAAAATCATGTAAAACTGA-GCCGGGCCCCAGAACGCG
* * * * * ** ** * * ** * *
1298 TTGTTAGCAAAAAAAACAGT-GATGGTTAT-TAC-ATGAGTTCGACTAAAATT-TTTC----GAT
1 TTTTTAGC-AAAAAACCAGTACACGATT-TCGGCTAAAATTTTGAAAAAAATTGATCCGAAAGAT
* ** * * * * *
1355 ATTAACACAA-TTTTGGAAAAAATATTAATGAAAAAT-TATAATTAAATTG-CAAAAAGATTGAA
64 TTTTCCTCAATTTTTGGAAAAAATACTAATAAAAAATATATAATTCAA-CGCCAAAAAGATTGAA
* * *** *** * * *
1417 CGGCTTTTTACGCTTCTAATATTAATTTTC-CTCTT-TTTTCGAATTAATTCCTAATTAA-ATAG
128 GGGCTTTTCACGCTTCTAATATCGTTTTTCAGAATTAATTTCTAATTAAAT-C-AA--AACA-AG
* * * * * * *
1479 AAACA-ATGCTT-GTAAAAACAAATCCTTAAATCCAATGTAGCTGAGATTTGGTAAAATGAACAT
188 ATACAGATG-TTCGTAAAAACAAATCCTTAAATCCAATGTGGCCGAGATTTTGTTAGATGAATAT
* * * * * * * * * * *
1542 AAAAATTTCAAGAATTCTTGGCGCCAAAAATCATGTAAAAAT-ATGTCAGGGCATCGGATCACGT
252 AAATATTACAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGA-G-CCGGGCCTCGAAACGCGT
* * * * *
1606 TTTTAGTC-AAAACCCATAATGGTTTAATACACGATATGGGCAAAAATTTTGCGAATATTGACCC
315 TTTTAGCCGAAAA-CCATGATGG-TTAGTACACGATTTCGGCAAAAATTTTGC--A-A-T-ACCC
** * * * **
1670 GAAAGCGTTTTCCTCAATTTCTGGCCATAATACTAAT-AAAAATATATAATTCAATGTTAAAAAG
373 GAAAGAATTTTCCTCAATTTTTGGCCAAAATACTAATAAAAAATATATAATTCAACGCCAAAAAG
* *
1734 ATTGAAGGGCTTTTTACGCTTCTAATATCACT-TTTCCTA-TTTTC-GAATTAATTTCTAATTAA
438 ATTAAAGGGCTTTTCACGCTTCTAATATCA-TATTTCCTATTTTTCTGAATTAATTTCTAATTAA
* * **
1796 ATCGAAACAAGATTCATATGCTCGTAAAAATAAAT-TCTTAAATCTAATAG-GGCTGAGATTTAA
502 ATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCT-TTAAATCTAAT-GTGGCTGAGATTTTG
* * * ** * * * *
1859 TTTGATGAATAAAGTTATTTTGAGAAGC-CTTGGCACCAAAAATCATGCAAAACTGATACTGGGT
565 TTAGATGAATATAGATATTTCAAGAA-CTCTTGGCACCAAAAATCATGTAAAACTGA-GCCGGGC
*
1923 CCTAGAACGCG
628 CCCAGAACGCG
*
1934 TTTTTAGTAAAAAACCGTAATGGTTAGTCCACGATTTCGGCTAAAATTTTGAAAAAAA-TGAT-C
1 TTTTTAGCAAAAAACC---A--G-TA---CACGATTTCGGCTAAAATTTTGAAAAAAATTGATCC
* ** ** * * **
1997 TAAAGGATTTTTCCTTGATTTTTGGGCAAAATACTAACAAAAAGAAAATATAATTCAACGTAAAA
57 GAAA-GATTTTTCCTCAATTTTTGGAAAAAATACTAA-TAAAA-AATATATAATTCAACGCCAAA
* * *
2062 AAGATTGAAGGGCTTTTCACACTTTTAATATCGTTTTTCCAATTTTTATCAGAATTAACTTCTAA
119 AAGATTGAAGGGCTTTTCACGCTTCTAATATCG----------TTTT-TCAGAATTAATTTCTAA
* * * * *
2127 TAAAATCGAAACAAGATTCAGATG-TCGTTAAAACAAATCCTTAAATCCAATGTGCCCGAGATTT
173 TTAAATCAAAACAAGATACAGATGTTCGTAAAAACAAATCCTTAAATCCAATGTGGCCGAGATTT
* * * *
2191 TGTTAGATGAATATAAATATTACAAGGGGTCTTGGCGTCAAAAATCATGCAAAACTAAGTCGGGC
238 TGTTAGATGAATATAAATATTACAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGC
* * * *
2256 TCTAGAAACGCGTTTTTAGCCGAAAAACCGTGATGGTTAGTACACGATTTCGTCGAAAATTTTGC
303 -CTCGAAACGCGTTTTTAGCCG-AAAACCATGATGGTTAGTACACGATTTCGGCAAAAATTTTGC
* * ** *
2321 AAAAATTGACACGAGAA-AATTTTCCTCAATTTTTGGCTAAAATTGTTATAAAAAATATATAATT
366 ---AA-T-ACCCGA-AAGAATTTTCCTCAATTTTTGGCCAAAATACTAATAAAAAATATATAATT
* * * *
2385 CAACGCCAAAAAGATTGAAA-GGCTTTTCACGCATCTAATATCGTATTTCCTATTTTTTATAAAT
425 CAACGCCAAAAAGATT-AAAGGGCTTTTCACGCTTCTAATATCATATTTCCTA-TTTTTCTGAAT
* * * * * *
2449 TAATTTCTAAATAAATCGAAGCAAGATTCGGCTGCTCGTAAAAACAAATCTTTAAATCTACTATG
488 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTTTAAATCTAATGTG
* ** * * * *
2514 GCTGACATTCGGTTAGATGGATATAGATATTACAAGAAGTCTTGACGA-CAAAAATCATGTAAAA
553 GCTGAGATTTTGTTAGATGAATATAGATATTTCAAGAACTCTTGGC-ACCAAAAATCATGTAAAA
* * * * **
2578 CTGATCTGAGGCCTCAAAATACG
617 CTGAGCCG-GGCCCCAGAACGCG
* * * * *
2601 TTGTTAGCCAAAAAACCAATGATAAAGTACATGATTTCGGCTAAAATCTTG-CAAAAATTTA-CC
1 TTTTTAG-CAAAAAACC--------AGTACACGATTTCGGCTAAAATTTTGAAAAAAATTGATCC
* * * ** * * * **
2664 GAAAGCA-ATTTCCACTATTTTTGGCCAAAATATTAATATAAAAT-TATAATTTAACTACAAAAA
57 GAAAG-ATTTTTCCTCAATTTTTGGAAAAAATACTAATAAAAAATATATAATTCAACGCCAAAAA
* *** * * * *
2727 GATTGGAGATTTTTTTACGCTTCTTATATCGTTCTTCCTATTTTTCCGAATTAAATTT-TATTTA
121 GATTGAAGGGCTTTTCACGCTTCTAATATCG---------TTTTTCAGAATT-AATTTCTAATTA
** * * * * * * * * *
2791 AATTGAAATAAGATTC-GAATGCTCGTAAAAACAGATCCATAAATCCAACGTAGCTGAGATTTGG
176 AATCAAAACAAGATACAG-ATGTTCGTAAAAACAAATCCTTAAATCCAATGTGGCCGAGATTTTG
* * * * * * * * * *
2855 TAAGATGAATAGAGATATTTCAAGAAGTCTTGACGCCAAAAATCATGCAAAAATAAGCTGGGGTC
240 TTAGATGAATATAAATATTACAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGC-CGGGCC
* * ** * * * *
2920 TTGAAATGCGTTTTTAGCTTAAAACCGTGATGGTTAGAACACGATATGGGCAAAAATTTTGCAAA
304 TCGAAACGCGTTTTTAGCCGAAAACCATGATGGTTAGTACACGATTTCGGCAAAAATTTTGC---
** ** * *
2985 AATTAACCCGAAAGCTTTTTAATCAATTTTGTGGCTATAATACTAAT-AAAAATATATAATTCAA
366 AA-T-ACCCGAAAGAATTTTCCTCAATTTT-TGGCCAAAATACTAATAAAAAATATATAATTCAA
3049 CG
428 CG
3051 TTGAAAATAT
Statistics
Matches: 1867, Mismatches: 407, Indels: 230
0.75 0.16 0.09
Matches are distributed among these distances:
624 11 0.01
625 46 0.02
626 21 0.01
627 68 0.04
628 20 0.01
629 22 0.01
630 28 0.01
631 21 0.01
634 1 0.00
635 26 0.01
636 257 0.14
637 87 0.05
638 40 0.02
639 80 0.04
640 6 0.00
641 1 0.00
642 1 0.00
644 1 0.00
645 7 0.00
646 57 0.03
647 16 0.01
648 9 0.00
649 29 0.02
650 75 0.04
651 19 0.01
652 3 0.00
653 3 0.00
654 39 0.02
659 26 0.01
660 23 0.01
661 136 0.07
662 188 0.10
663 199 0.11
664 77 0.04
665 12 0.01
666 39 0.02
667 158 0.08
668 10 0.01
670 2 0.00
671 1 0.00
673 2 0.00
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.32
Consensus pattern (638 bp):
TTTTTAGCAAAAAACCAGTACACGATTTCGGCTAAAATTTTGAAAAAAATTGATCCGAAAGATTT
TTCCTCAATTTTTGGAAAAAATACTAATAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGG
CTTTTCACGCTTCTAATATCGTTTTTCAGAATTAATTTCTAATTAAATCAAAACAAGATACAGAT
GTTCGTAAAAACAAATCCTTAAATCCAATGTGGCCGAGATTTTGTTAGATGAATATAAATATTAC
AAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGCCTCGAAACGCGTTTTTAGCCGAA
AACCATGATGGTTAGTACACGATTTCGGCAAAAATTTTGCAATACCCGAAAGAATTTTCCTCAAT
TTTTGGCCAAAATACTAATAAAAAATATATAATTCAACGCCAAAAAGATTAAAGGGCTTTTCACG
CTTCTAATATCATATTTCCTATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGAT
GCTCGTAAAAACAAATCTTTAAATCTAATGTGGCTGAGATTTTGTTAGATGAATATAGATATTTC
AAGAACTCTTGGCACCAAAAATCATGTAAAACTGAGCCGGGCCCCAGAACGCG
Found at i:2984 original size:329 final size:329
Alignment explanation
Indices: 1373--3049 Score: 1240
Period size: 329 Copynumber: 5.1 Consensus size: 329
1363 AATTTTGGAA
* * * * *
1373 AAAATATTAATGAAAAAT-TATAATTAAATTGCAAAAAGATTGAACG-GCTTTTTACGCTTCTAA
1 AAAATATTAATAAAAAATATATAATTCAACTACAAAAAGATTGAA-GAGCTTTTCACGCTTCTAA
** * * * *
1436 TATTAATTTTCCTCTTTTTT-CGAATTAATTCCTAATTAAAT----AGAA-A--CAATGCTTGTA
65 TA-TCGTTTTCCTATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAATGCTCGTA
* * * * * * *
1493 AAAACAAATCCTTAAATCCAATGTAGCTGAGATTTGGTAAAATGAACATAAAAATTTCAAGAATT
129 AAAACAAATCCTTAAATCCAACGTAGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGAAGT
* * * * * * *
1558 CTTGGCGCCAAAAATCATGTAAAAATATG-TCAGGG-CATCG-GATCACGTTTTTAG-TCAAAAC
194 CTTGGCGCCAAAAATCATGCAAAACTAAGCT-GGGGTC-TCGAAAT-GCGTTTTTAGCT-AAAAA
* * * * * * * **
1619 CCATAATGGTTTAATACACGATATGGGCAAAAATTTTGCGAATATTGACCCGAAAGCGTTTTCCT
255 CCGTGATGG-TTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGA-CCGAAAGCAATTTCCT
*
1684 CAATTTCTGGCC
318 CAATTTTTGGCC
* * ** * *
1696 ATAATACTAAT-AAAAATATATAATTCAA-TGTTAAAAAGATTGAAGGGCTTTTTACGCTTCTAA
1 AAAATATTAATAAAAAATATATAATTCAACT-ACAAAAAGATTGAAGAGCTTTTCACGCTTCTAA
*
1759 TATCACTTTTCCTA--TTTT-CGAATTAATTTCTAATTAAATCGAAACAAGATTCATATGCTCGT
65 TATC-GTTTTCCTATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCA-ATGCTCGT
* * * ** * * * **
1821 AAAAATAAATTCTTAAATCTAA--TAGGGCTGAGATTTAATTTGATGAATAAAGTTATTTTGAGA
128 AAAAACAAATCCTTAAATCCAACGTA--GCTGAGATTTGGTTAGATGAATATAGATATTTCAAGA
* * * *
1884 AGCCTTGGCACCAAAAATCATGCAAAACTGATA-CT-GGGTC-CTAGAACGCGTTTTTAG-TAAA
191 AGTCTTGGCGCCAAAAATCATGCAAAACT-A-AGCTGGGGTCTCGA-AATGCGTTTTTAGCT-AA
* * * * * * * * *
1945 AAACCGTAATGGTTAGTCCACGATTTCGGCTAAAATTTTGAAAAAAATGATCTAAAGGATTTTTC
252 AAACCGTGATGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCGAAAGCA-ATTTC
** *
2010 CTTGATTTTTGGGC
316 CTCAATTTTTGGCC
* * * * * *
2024 AAAATACTAACAAAAAGAAAATATAATTCAACGTA-AAAAAGATTGAAGGGCTTTTCACACTTTT
1 AAAATATTAA-TAAAA-AATATATAATTCAAC-TACAAAAAGATTGAAGAGCTTTTCACGCTTCT
* * * *
2088 AATATCGTTTTTCCAATTTTTATCAGAATTAACTTCTAATAAAATCGAAACAAGATTCAGATG-T
63 AATATCG-TTTTCCTATTTTT-TCCGAATTAATTTCTAATTAAATCGAAACAAGATTCA-ATGCT
* * * * * *
2152 CGTTAAAACAAATCCTTAAATCCAATGT-GCCCGAGATTTTGTTAGATGAATATAAATATTACAA
125 CGTAAAAACAAATCCTTAAATCCAACGTAG-CTGAGATTTGGTTAGATGAATATAGATATTTCAA
** * * * * *
2216 GGGGTCTTGGCGTCAAAAATCATGCAAAACTAAG-TCGGGCTCTAGAAACGCGTTTTTAGCCGAA
189 GAAGTCTTGGCGCCAAAAATCATGCAAAACTAAGCT-GGGGTCTCGAAATGCGTTTTTAG-CTAA
* *
2280 AAACCGTGATGGTTAGTACACGATTTCGTCGAAAATTTTGCAAAAATTGACACGAGAA--AATTT
252 AAACCGTGATGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGAC-CGA-AAGCAA-TT
*
2343 TCCTCAATTTTTGGCT
314 TCCTCAATTTTTGGCC
* ** *
2359 AAAAT-TGTTATAAAAAATATATAATTCAACGCCAAAAAGATTGAA-AGGCTTTTCACGCATCTA
1 AAAATAT-TAATAAAAAATATATAATTCAACTACAAAAAGATTGAAGA-GCTTTTCACGCTTCTA
*** * * **
2422 ATATCGTATTTCCTATTTTTTATAAATTAATTTCTAAATAAATCGAAGCAAGATTCGGCTGCTCG
64 ATATCGT-TTTCCTATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTC-AATGCTCG
* * * * * *
2487 TAAAAACAAATCTTTAAAT-CTAC-TATGGCTGACATTCGGTTAGATGGATATAGATATTACAAG
127 TAAAAACAAATCCTTAAATCCAACGTA--GCTGAGATTTGGTTAGATGAATATAGATATTTCAAG
* * * * * * * * * * *
2550 AAGTCTTGACGACAAAAATCATGTAAAACTGATCTGAGGCCTCAAAATACGTTGTTAGCCAAAAA
190 AAGTCTTGGCGCCAAAAATCATGCAAAACTAAGCTGGGGTCTCGAAATGCGTTTTTAG-CTAAAA
* ** * * * * *
2615 ACCAATGAT--AAAGTACATGATTTCGGCTAAAATCTTGCAAAAATTTACCGAAAGCAATTTCCA
254 ACC-GTGATGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCGAAAGCAATTTCCT
*
2678 CTATTTTTGGCC
318 CAATTTTTGGCC
* * * ** * *
2690 AAAATATTAATATAAAAT-TATAATTTAACTACAAAAAGATTGGAGATTTTTTTACGCTTCTTAT
1 AAAATATTAATAAAAAATATATAATTCAACTACAAAAAGATTGAAGAGCTTTTCACGCTTCTAAT
* * *
2754 ATCGTTCTTCCTA-TTTTTCCGAATTAAATTT-TATTTAAATTGAAATAAGATTCGAATGCTCGT
66 ATCGTT-TTCCTATTTTTTCCGAATT-AATTTCTAATTAAATCGAAACAAGATTC-AATGCTCGT
* * * *
2817 AAAAACAGATCCATAAATCCAACGTAGCTGAGATTTGGTAAGATGAATAGAGATATTTCAAGAAG
128 AAAAACAAATCCTTAAATCCAACGTAGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGAAG
* * * *
2882 TCTTGACGCCAAAAATCATGCAAAAATAAGCTGGGGTCTTGAAATGCGTTTTTAGCTTAAAACCG
193 TCTTGGCGCCAAAAATCATGCAAAACTAAGCTGGGGTCTCGAAATGCGTTTTTAGCTAAAAACCG
* * * * ** **
2947 TGATGGTTAGAACACGATATGGGCAAAAATTTTGCAAAAATTAACCCGAAAGCTTTTTAATCAAT
258 TGATGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGA-CCGAAAGCAATTTCCTCAAT
*
3012 TTTGTGGCT
322 TTT-TGGCC
* *
3021 ATAATACTAAT-AAAAATATATAATTCAAC
1 AAAATATTAATAAAAAATATATAATTCAAC
3050 GTTGAAAATA
Statistics
Matches: 1060, Mismatches: 227, Indels: 126
0.75 0.16 0.09
Matches are distributed among these distances:
321 24 0.02
322 9 0.01
323 56 0.05
325 3 0.00
326 1 0.00
327 11 0.01
328 63 0.06
329 256 0.24
330 84 0.08
331 112 0.11
332 71 0.07
333 161 0.15
334 100 0.09
335 104 0.10
336 3 0.00
337 2 0.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (329 bp):
AAAATATTAATAAAAAATATATAATTCAACTACAAAAAGATTGAAGAGCTTTTCACGCTTCTAAT
ATCGTTTTCCTATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAATGCTCGTAAA
AACAAATCCTTAAATCCAACGTAGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGAAGTCT
TGGCGCCAAAAATCATGCAAAACTAAGCTGGGGTCTCGAAATGCGTTTTTAGCTAAAAACCGTGA
TGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCGAAAGCAATTTCCTCAATTTTT
GGCC
Found at i:3473 original size:31 final size:30
Alignment explanation
Indices: 3385--5081 Score: 1613
Period size: 26 Copynumber: 60.9 Consensus size: 30
3375 ATGCAACTAA
3385 ATGA-CCCTACTGAATATGCAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
3410 ATGAGCCCTACTGAATATGCAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
* *
3436 ATGAGCCCAACTAAATATGCAACTACATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
3467 ATGAGCCCTACTGAATATGCAACTACATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
3498 ATGAGCCCTACTGAATATGCAACTACATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
* *
3529 ATGGGTCCTACTGAATATGCAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
*
3555 ATGAGTCCTACTGAATATGCAACT--A-T-
1 ATGAGCCCTACTGAATATGCAACTACATTC
*
3581 ATGAGTCCTACTGAATATGCAACT--A-T-
1 ATGAGCCCTACTGAATATGCAACTACATTC
*
3607 ATGAGCCCTACTGAATATGCAACTACACGTC
1 ATGAGCCCTACTGAATATGCAACTACA-TTC
3638 ATGAGCCCTACTGAATATGCAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
3664 ATGAGCCCTACTGAATATGCAACTACATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
*
3695 ATGAGCCCTACTGAATATGCAACTATATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
*
3726 ATGAGCCCTACTGGATATGCAACTACATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
3757 ATGAGCCCTACTGAATATGCAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
*
3783 ATGAGTCCTACTGAAT-T-CAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
*
3807 ATG-GCCATACTGAATATGCAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
3832 ATGAGCCCTACTGAATATGCAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
3858 ATGA-CCCTACTGAATATGCAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
* *
3883 ATGAACCCTACTGAATATGCAATTACATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
3914 ATGAGCCCTACTGAATATGCAACTACA-T-
1 ATGAGCCCTACTGAATATGCAACTACATTC
3942 -T-AGCCCTACTGAATATGCAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
3966 ATGAGCCCTACTGAATATGCAACTACATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
*
3997 ATGAGCCCTACTGAATATGCAACTACACGTC
1 ATGAGCCCTACTGAATATGCAACTACA-TTC
4028 ATGAGCCCTACTGAATATGCAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
4054 ATGAGCCCTACTGAATATGCAACTACATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
*
4085 ATGAGCCCTACTGAATATGCAACTATATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
*
4116 ATGAGCCCTACTGGATATGCAACTACATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
4147 ATGAGCCCTACTGAATATGCAACTACATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
*
4178 ATGAGACCTACTGAATATGCAACTACATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
*
4209 AT-AGGTCCTACTGAATATGCAACT--A--C
1 ATGA-GCCCTACTGAATATGCAACTACATTC
4235 ATGAGCCCTACTGAATATGCAACT--A-T-
1 ATGAGCCCTACTGAATATGCAACTACATTC
4261 ATGAGCCCTACTGAATATGCAAC--CA-T-
1 ATGAGCCCTACTGAATATGCAACTACATTC
* *
4287 ATGAGCCCTACTGAATATGGAACTAAATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
4318 ATGA-CCTCTACTGAATATGCAACTACATGTC
1 ATGAGCC-CTACTGAATATGCAACTACAT-TC
*
4349 ATG-GTTCCTACTGAATATGCAACT--A--C
1 ATGAG-CCCTACTGAATATGCAACTACATTC
4375 ATGAGCCCTACTGAATATGCAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
* *
4401 ATGAGCCCTACTGAATACGCAACTAAATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
*
4432 ATGAGCCCTACTGAATATGCAA--GCA--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
4458 ATGAGCCCTA-TCGAATATGCAACTAC--T-
1 ATGAGCCCTACT-GAATATGCAACTACATTC
4485 -TGAGCCCTACTGAATATGCAACTA-A---
1 ATGAGCCCTACTGAATATGCAACTACATTC
* *
4510 ATAAGCTCTACTGAATATGCAACTAC--T-
1 ATGAGCCCTACTGAATATGCAACTACATTC
*
4537 -TGAGCCCTAATGAATATGC-A--AC-TTC
1 ATGAGCCCTACTGAATATGCAACTACATTC
*
4562 ATG-GCCCTATTGAATATGCAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
*
4587 ATGAGCTCTACTGAATATGCAACTACA---
1 ATGAGCCCTACTGAATATGCAACTACATTC
4614 A-G-GCCCTACTGAATATGCAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
4638 ATGAGCCCTACTGAATATGCAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
* *
4664 ATG-GCCCTATTGAATATGC--C-AC-TAC
1 ATGAGCCCTACTGAATATGCAACTACATTC
*
4689 ATGAGCCCTACTGAATATGCAACTATATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
* *
4720 ATGAGCCCTACTGAATATGCAACTAAATGTG
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
4751 ATGAGCCCTACTGAATATGCAACT--A-T-
1 ATGAGCCCTACTGAATATGCAACTACATTC
*
4777 ATGAGCCCTGCTGAATATGCAACTACATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
* *
4808 ATGGGTCCTACTGAATATGCAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
4834 ATGAGCCCTACTGAATATGCAACT--A-T-
1 ATGAGCCCTACTGAATATGCAACTACATTC
4860 ATGAGCCCTACTGAATATGCAACT--A-T-
1 ATGAGCCCTACTGAATATGCAACTACATTC
*
4886 ATGAGCCCTACTGAATATGCAACTAAATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
** *
4917 ATGAGTTCTACTGAATATGCAACTAAATGTC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
* *
4948 ATGAGCCCTACTGAATATGCAACTATATGGC
1 ATGAGCCCTACTGAATATGCAACTACAT-TC
* *
4979 ATGGGTCCTACTGAATATGCAACTA-A---
1 ATGAGCCCTACTGAATATGCAACTACATTC
*
5005 ATGA-CCTTACTGAATATGCAACT--A--C
1 ATGAGCCCTACTGAATATGCAACTACATTC
5030 ATGAGCCCTACTGAATATGCAACT--A-T-
1 ATGAGCCCTACTGAATATGCAACTACATTC
*
5056 ATG-GCCCTACTGAATATGCAGCTACA
1 ATGAGCCCTACTGAATATGCAACTACA
5082 CGCTACATGA
Statistics
Matches: 1494, Mismatches: 72, Indels: 210
0.84 0.04 0.12
Matches are distributed among these distances:
23 14 0.01
24 15 0.01
25 141 0.09
26 650 0.44
27 7 0.00
28 13 0.01
29 11 0.01
30 9 0.01
31 633 0.42
32 1 0.00
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.26
Consensus pattern (30 bp):
ATGAGCCCTACTGAATATGCAACTACATTC
Found at i:3481 original size:57 final size:57
Alignment explanation
Indices: 3263--5112 Score: 1988
Period size: 57 Copynumber: 33.4 Consensus size: 57
3253 CTAGATGTCC
* * *
3263 CCCTAATGAATATGCAACTGCAT-AACCCTACTGAATATGC-A--AC-TG-CATGA-
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
* * * * *
3313 CCCTACAGAATATGCAATTACATGAGTCCTGCAGAATATGCAACT--A---CATG-G
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
* * *
3364 CCATACTAAATATGCAACTAAATGA-CCCTACTGAATATGCAACT--A---CATGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
* *
3415 CCCTACTGAATATGCAACTACATGAGCCCAACTAAATATGCAACTACATGTCATGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
*
3472 CCCTACTGAATATGCAACTACATGTCATGAGCCCTACTGAATATGCAACTACATGTCATGGG
1 CCCTACTGAATATGCAACT--A---CATGAGCCCTACTGAATATGCAACTACATGTCATGAG
* *
3534 TCCTACTGAATATGCAACTACATGAGTCCTACTGAATATGCAACT--A--T-ATGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
* * *
3586 TCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTACACGTCATGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
3643 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
*
3700 CCCTACTGAATATGCAACTATATGTCATGAGCCCTACTGGATATGCAACTACATGTCATGAG
1 CCCTACTGAATATGCAAC--TA---CATGAGCCCTACTGAATATGCAACTACATGTCATGAG
*
3762 CCCTACTGAATATGCAACTACATGAGTCCTACTGAAT-T-CAACT--A---CATG-G
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
*
3811 CCATACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACT--A---CATGA-
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
* *
3862 CCCTACTGAATATGCAACTACATGAACCCTACTGAATATGCAATTACATGTCATGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
*
3919 CCCTACTGAATATGCAACTACATTAGCCCTACTGAATATGCAACT--A---CATGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
*
3971 CCCTACTGAATATGCAACTACATGTCATGAGCCCTACTGAATATGCAACTACACGTCATGAG
1 CCCTACTGAATATGCAACT--A---CATGAGCCCTACTGAATATGCAACTACATGTCATGAG
4033 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
*
4090 CCCTACTGAATATGCAACTATATGTCATGAGCCCTACTGGATATGCAACTACATGTCATGAG
1 CCCTACTGAATATGCAAC--TA---CATGAGCCCTACTGAATATGCAACTACATGTCATGAG
*
4152 CCCTACTGAATATGCAACTACATGTCATGAGACCTACTGAATATGCAACTACATGTCAT-AGG
1 CCCTACTGAATATGCAACT--A---CATGAGCCCTACTGAATATGCAACTACATGTCATGA-G
*
4214 TCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACT--A--T-ATGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
* * * *
4266 CCCTACTGAATATGCAACCATATGAGCCCTACTGAATATGGAACTAAATGTCATGA-
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
*
4322 CCTCTACTGAATATGCAACTACATGTCATGGTTCCTACTGAATATGCAACT--A---CATGAG
1 CC-CTACTGAATATGCAACTACATG--A--G-CCCTACTGAATATGCAACTACATGTCATGAG
* *
4380 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATACGCAACTAAATGTCATGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
4437 CCCTACTGAATATGCAAGC-ACATGAGCCCTA-TCGAATATGCAACTAC---T--TGAG
1 CCCTACTGAATATGCAA-CTACATGAGCCCTACT-GAATATGCAACTACATGTCATGAG
* * *
4489 CCCTACTGAATATGCAACTAAATAAGCTCTACTGAATATGCAACTAC---T--TGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
* * *
4541 CCCTAATGAATATGCAACTTCATG-GCCCTATTGAATATGCAACT--A---CATGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
* *
4592 CTCTACTGAATATGCAACTACAAG-GCCCTACTGAATATGCAACT--A---CATGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
* *
4643 CCCTACTGAATATGCAACTACATG-GCCCTATTGAATATGC--C-AC-T-ACATGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
* *
4694 CCCTACTGAATATGCAACTATATGTCATGAGCCCTACTGAATATGCAACTAAATGTGATGAG
1 CCCTACTGAATATGCAAC--TA---CATGAGCCCTACTGAATATGCAACTACATGTCATGAG
* * *
4756 CCCTACTGAATATGCAACTATATGAGCCCTGCTGAATATGCAACTACATGTCATGGG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
*
4813 TCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACT--A--T-ATGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
* *
4865 CCCTACTGAATATGCAACTATATGAGCCCTACTGAATATGCAACTAAATGTCATGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
** * * *
4922 TTCTACTGAATATGCAACTAAATGTCATGAGCCCTACTGAATATGCAACTATATGGCATGGG
1 CCCTACTGAATATGCAACT--A---CATGAGCCCTACTGAATATGCAACTACATGTCATGAG
* * *
4984 TCCTACTGAATATGCAACTAAATGA-CCTTACTGAATATGCAACT--A---CATGAG
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
* * *
5035 CCCTACTGAATATGCAACTATATG-GCCCTACTGAATATGCAGCTACACGCTACATGA-
1 CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATG-T-CATGAG
* *
5092 CTACTACTGAACATGCAACTA
1 C-CCTACTGAATATGCAACTA
5113 AAGGATGAAG
Statistics
Matches: 1576, Mismatches: 110, Indels: 220
0.83 0.06 0.12
Matches are distributed among these distances:
49 37 0.02
50 45 0.03
51 286 0.18
52 267 0.17
53 11 0.01
54 8 0.01
55 10 0.01
56 34 0.02
57 499 0.32
58 25 0.02
59 9 0.01
60 11 0.01
61 3 0.00
62 331 0.21
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.26
Consensus pattern (57 bp):
CCCTACTGAATATGCAACTACATGAGCCCTACTGAATATGCAACTACATGTCATGAG
Done.