Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018145.1 Corchorus olitorius cultivar O-4 contig18178, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96938

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4629--4668
22
2.0
21
85
14
57
47
17
12
22
1.81
21635--21678
23
1.9
23
86
9
63
50
9
4
36
1.55
23206--23255
21
2.3
22
93
3
84
60
20
0
20
1.37
33050--33080
5
6.2
5
100
0
62
0
19
0
80
0.71
46708--46876
80
2.1
80
92
0
275
29
10
15
43
1.81
51455--51538
39
2.2
39
97
2
161
23
23
17
34
1.96
52013--52066
27
2.0
27
96
0
99
27
38
3
29
1.74
53375--53434
32
1.9
31
86
6
86
26
11
40
21
1.88
54193--54237
11
3.8
11
78
16
54
22
0
31
46
1.52
54195--54253
25
2.4
25
97
2
111
20
0
30
49
1.49
54332--54414
41
2.0
42
92
2
141
27
20
12
39
1.88
55874--55905
12
2.7
12
100
0
64
0
15
31
53
1.43
56411--56440
5
6.0
5
92
0
51
3
20
36
40
1.69
57322--57394
36
2.0
36
91
0
119
38
24
19
17
1.93
64230--64282
2
26.5
2
80
0
52
49
5
3
41
1.44
79972--80003
14
2.3
14
100
0
64
59
15
18
6
1.57
95667--95836
87
2.0
87
93
0
295
45
8
15
31
1.75

Tables:   1

The End!