Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018149.1 Corchorus olitorius cultivar O-4 contig18182, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3123
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Found at i:608 original size:334 final size:331
Alignment explanation
Indices: 51--3123 Score: 4186
Period size: 334 Copynumber: 9.3 Consensus size: 331
41 GTGTATTGAT
* *
51 TTGAATTATTTGATTTGAT-TGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAG-T
1 TTGAATTATATGATTT-TTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAGTT
* * * * *
114 TTTTGCAAAATTTTAACCGAAATCGTGTAATAATCATCACTGTTTTTAGCTAAAAATGCGTTTCG
65 TTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACGGTTTTTGGCTAAAAACGCGTTTC-
* *
179 GGGCCCTGACTCAGTTTTGCATAATTTTTGGCAGAAAGTCTCCTCGAAATATCTGTATTCATCTA
129 GGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGTATTCATCTA
* * * * *
244 ACCAAATCTTAGCCATGTTGGATTTACAGATTTGTTTTCACGAGCATCTGAGTCCTGTTTCGATT
194 ACCAAATCTCAGCCACGTTGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATT
309 TAATTA-AGAATAAATTCGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAAT
259 TAATTAGA-AATAAATT-GGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAAT
373 TTTTTTGGCG
322 TTTTTTGGCG
* *
383 TTGAATTATATGATTTTTCTTAGTATTGTGGCAAAAAATTTGGGAAAAACTTTTCGGGTCAGTAT
1 TTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAGT-T
* * * *
448 TTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATAACGGTTTTTGGTTAAAAATGCGTTTTG
65 TTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACGGTTTTTGGCTAAAAACGCGTTTCG
**
513 GGTCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTTTCGAAATATCT-TCATTCATCT
130 GG-CCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGT-ATTCATCT
* * * * *
577 AACCAAATCTTAGCCACGTTGGATTTACAGATTTATTTTTACTAGTATTTGAATCTTGTTTCGAT
193 AACCAAATCTCAGCCACGTTGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGAT
* * * * * **
642 TTAATTAGAAATGTATTGTGGCAGAAAATGGAAAAACGATATTAGAAGCTTGAAAAACCCTAAAA
258 TTAATTAGAAAT-AAAT-TGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAA
* **
707 TATTTTTGGAA
321 TTTTTTTGGCG
*
718 TTGAATTATATGATTTTTCTGAGTGTTGTGGCAAAAAATTGGGGAAAATA-TTTTCGGGTCAGTT
1 TTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAA-ACTTTTCGGGTCAGTT
* * *
782 TTTTGGAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCA
65 TTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACGGTTTTTGGCTAAAAACGCGTTTC-
* * * *
847 GGGCCCTGACTCAGTTTTGCATGATTTTTGCCAGAAATACTCCGCGAAATATCTGTTTTCATCTA
129 GGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGTATTCATCTA
* * * * *
912 ACCAATTCTCAACCATGTTGGATTTACTGATTTGTTTTCTACGAGCATCTGAGTCTTGTTTCGAT
194 ACCAAATCTCAGCCACGTTGGATTTACAGATTTGTTTT-TACGAGCATCTGAATCTTGTTTCGAT
*
977 TTAATTAGAAATAAATTCGGAAAAAAA-AGAAAAACGATATTAGAAGCGTG-AAAACATTAAAAT
258 TTAATTAGAAATAAATT-GGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAAT
1040 TTTTTTGGTCG
322 TTTTTTGG-CG
*
1051 TTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGATCAGTTT
1 TTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAG-TT
* *
1116 TTTTGCAAAATTTTAGCCGATAT--TGT-AT-A-CGTCACGGTTTTTGGCTAAAAACGCGTTTCG
65 TTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACGGTTTTTGGCTAAAAACGCGTTTC-
* * * *
1176 GGGACCTGACTCAGTTTTGCATTATTTTTGGCAGAAAGTCACCTCGAAATATCTGTATTCATCTA
129 GGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGTATTCATCTA
* * * * * *
1241 ATCAAATCTCAGCCACGTTAGATTTACGGATTTAG-TTTTATGAGTATTTGAATCTTGTTTCGAT
194 ACCAAATCTCAGCCACGTTGGATTTACAGATTT-GTTTTTACGAGCATCTGAATCTTGTTTCGAT
* * * * **
1305 TTAATTAGAAATGTATTGTGGCAGAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAA
258 TTAATTAGAAAT-AAAT-TGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAA
* **
1370 TATTTTTGGAA
321 TTTTTTTGGCG
* *
1381 TTGAATTATATGATTTTTCTGAGTGTTGTGGCAAAAAAATTGGGGAAAATCTTTTCGGGTCAGTT
1 TTGAATTATATGATTTTTCTGAGTATTGTGGC-AAAAAATTGGGGAAAAACTTTTCGGGTCAGTT
* * *
1446 TTTTGGAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCG
65 TTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACGGTTTTTGGCTAAAAACGCGTTTC-
* *
1511 GGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGTCTCCTCGAAATATCTTTATTCATCTA
129 GGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGTATTCATCTA
*
1576 ACCAAATCTCAGCCACGATGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATT
194 ACCAAATCTCAGCCACGTTGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATT
* *
1641 TAATTAGAAATAAATTGAGAAAAAGATGGAAAAACGATATTAGAAGCGTGAAAAGCATTAAAATT
259 TAATTAGAAATAAATTG-GAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAATT
1706 TTTTTGGCG
323 TTTTTGGCG
** * *
1715 TTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAGTTTGGGGAAAATCATTTCGGGTCAGTAT
1 TTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAGT-T
* * *
1780 TTTTGCAAAATTTTAGCCGAAATCGTG---TAA-CATAACGGTTTTTGGTTAAAAATGCGTTTCG
65 TTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACGGTTTTTGGCTAAAAACGCGTTTC-
*
1841 GGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCTTCGAAATATCTGTATTCATCTA
129 GGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGTATTCATCTA
* * * * *
1906 ACCAAATCTCAGCCACGTTGGATTTACGGATTTATTTTTACTAGTATTTGAATCTTGTTTCGATT
194 ACCAAATCTCAGCCACGTTGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATT
* * * * **
1971 TAATTAGAAATGTATTGTGGCAGAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAAT
259 TAATTAGAAAT-AAAT-TGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAAT
* **
2036 ATTTTTGGAA
322 TTTTTTGGCG
*
2046 TTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTT
1 TTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAGTTT
* * * *
2111 TTTGGAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTCGCTGAAAACGCGTTTCGG
66 TTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGG
* *
2176 AGCCCTGACTCAGTTTTGCATGATTTTTGGTAGAAAGACTCCTCGAAATATCTGTATTTATCTAA
131 -GCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGTATTCATCTAA
* * *
2241 CCAAATCTCAGCCACGATGGATTTACAGATTTGTTTTTACGAGCATCTGAGTCCTGTTTCGATTT
195 CCAAATCTCAGCCACGTTGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
* *
2306 AATTA-AGAATAAATTCGTAAAAAAAATGGAAAAACGATATTAGAACCGTGAAAAACATTAAAAT
260 AATTAGA-AATAAATT-G-GAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAAT
*
2370 TTTTTTGGCA
322 TTTTTTGGCG
* * *
2380 TTAAATTATATGAGTTTTCTGAGTATTGTGGCAAAAAATAGGGGAAAATA-TTTTCGGGTCAGTT
1 TTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAA-ACTTTTCGGGTCAGTT
*
2444 TTTTGCCAAATTTTAGCCGAAATC--G------------CGGTTTTTGGCTAAAAACGCGTTTCG
65 TTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACGGTTTTTGGCTAAAAACGCGTTTCG
* *
2495 GAGCCCTAACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATCTCTGTATTCATCTA
130 G-GCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGTATTCATCTA
* * *
2560 ACAAAATCTCAGCCACGTTGGATTTACAGATTTCTTTTTACGAGCATCTGAATCTTGTTTCAATT
194 ACCAAATCTCAGCCACGTTGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATT
* *
2625 TAATTAGAAATAAATTGAGAAAAAGATGGAAAAACGATATTAGAAGCGT-AAAAAGCTTTAAAAT
259 TAATTAGAAATAAATTG-GAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAA-CATTAAAAT
2689 TTTTTTGGCG
322 TTTTTTGGCG
* * *
2699 TTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAA-TGGGGAAAATCTTTTTGGGTCATTTT
1 TTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAGTTT
* * * * * * *
2763 TTTCCAAAATTTTAGCCAAAATCTTGTACA-AACCATCACGGTTTTTTTGTTGAAAATGCGTTTC
66 TTTGCAAAATTTTAGCCGAAATCGTGTA-ATAACCATCACGG-TTTTTGGCTAAAAACGCGTTTC
* *
2827 GGAGCCCTGACTCAGTTTTGCATGATTTTTGGTAGAAAGACTCCTC-TAATATCTGTATTCATCT
129 GG-GCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGTATTCATCT
* *
2891 AACCAAATCTCAGCCACGATGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGAT
193 AACCAAATCTCAGCCACGTTGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGAT
* * * *
2956 TTAATTAGAAATAAATTGAGAAAAAGATGGAAAAACTATATTAGAACCGTGAAAAGCATTAAAAT
258 TTAATTAGAAATAAATTG-GAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAAT
3021 TTTTTTGGCG
322 TTTTTTGGCG
* *
3031 TTGAATTATATGATTTTTCTGGGTATTGTGGCAAAAAAATTGGGGAAAATCTTTTCGGGTCAGTT
1 TTGAATTATATGATTTTTCTGAGTATTGTGGC-AAAAAATTGGGGAAAAACTTTTCGGGTCAGTT
*
3096 TTTTGGAAAATTTTAGCCGAAATCGTGT
65 TTTTGCAAAATTTTAGCCGAAATCGTGT
Statistics
Matches: 2427, Mismatches: 252, Indels: 122
0.87 0.09 0.04
Matches are distributed among these distances:
318 46 0.02
319 82 0.03
320 159 0.07
321 1 0.00
328 34 0.01
329 124 0.05
330 265 0.11
331 160 0.07
332 261 0.11
333 196 0.08
334 792 0.33
335 305 0.13
336 2 0.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (331 bp):
TTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAGTTT
TTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGG
GCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGTATTCATCTAAC
CAAATCTCAGCCACGTTGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTA
ATTAGAAATAAATTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAATTTTT
TTGGCG
Found at i:2084 original size:664 final size:664
Alignment explanation
Indices: 1--3123 Score: 4683
Period size: 664 Copynumber: 4.7 Consensus size: 664
** * * * * *
1 AATGG-AAAACGATATTGAGAAGCGTGAAAAACCCTTCATTGTGTATT-GATTTGAATTATTTGA
1 AATGGAAAAACGATATT-AGAAGCGTGAAAAACCCTAAAATAT-TTTTGGAATTGAATTATATGA
* * *
64 TTTGAT-TGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAG-TTTTTGCAAAATTT
64 TTT-TTCTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTGGAAAATTT
* * * * * * *
127 TAACCGAAATCGTGTAATAATCATCACTGTTTTTAGCTAAAAATGCGTTTCGGGGCCCTGACTCA
128 TAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCA
* *
192 GTTTTGCATAATTTTTGGCAGAAAGTCTCCTCGAAATATCTGTATTCATCTAACCAAATCTTAGC
193 GTTTTGCATGATTTTTGGCAGAAAGTCTCCTCGAAATATCTGTATTCATCTAACCAAATCTCAGC
* * * *
257 CATGTTGGATTTACAGATTTGTTTTCACGAGCATCTGAGTCCTGTTTCGATTTAATTA-AGAATA
258 CACGATGGATTTACAGATTTGTTTTTACGAGCATCTGAGTCTTGTTTCGATTTAATTAGA-AATA
321 AATTCG-GAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAATTTTTTTGGCGTT
322 AATTCGAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAATTTTTTTGGCGTT
* * *
385 GAATTATATGATTTTTCTTAGTATTGTGGCAAAAAATTTGGGAAAAACTTTTCGGGTCAGTATTT
387 GAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGT-TTT
* * *
450 TTGCAAAATTTTAGCCGAAATCGTGTAATAACCATAACGGTTTTTGGTTAAAAATGCGTTTTGGG
451 TTGCAAAATTTTAGCCGAAATCGTG---TAA-CATAACGGTTTTTGGCTAAAAACGCGTTTCGGG
* **
515 TCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTTTCGAAATATCT-TCATTCATCTAA
512 GCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGT-ATTCATCTAA
*
579 CCAAATCTTAGCCACGTTGGATTTACAGATTTATTTTTACTAGTATTTGAATCTTGTTTCGATTT
576 CCAAATCTCAGCCACGTTGGATTTACAGATTTATTTTTACTAGTATTTGAATCTTGTTTCGATTT
644 AATTAGAAATGTATTGTGGCAGAA
641 AATTAGAAATGTATTGTGGCAGAA
*
668 AATGGAAAAACGATATTAGAAGCTTGAAAAACCCTAAAATATTTTTGGAATTGAATTATATGATT
1 AATGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGAATTGAATTATATGATT
* *
733 TTTCTGAGTGTTGTGGCAAAAAATTGGGGAAAATATTTTCGGGTCAGTTTTTTGGAAAATTTTAG
66 TTTCTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTGGAAAATTTTAG
*
798 CCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCAGGGCCCTGACTCAGTT
131 CCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTT
* * * * *
863 TTGCATGATTTTTGCCAGAAA-TACTCCGCGAAATATCTGTTTTCATCTAACCAATTCTCAACCA
196 TTGCATGATTTTTGGCAGAAAGT-CTCCTCGAAATATCTGTATTCATCTAACCAAATCTCAGCCA
* * *
927 TGTTGGATTTACTGATTTGTTTTCTACGAGCATCTGAGTCTTGTTTCGATTTAATTAGAAATAAA
260 CGATGGATTTACAGATTTGTTTT-TACGAGCATCTGAGTCTTGTTTCGATTTAATTAGAAATAAA
*
992 TTCG-GAAAAAAA-AGAAAAACGATATTAGAAGCGTG-AAAACATTAAAATTTTTTTGGTCGTTG
324 TTCGAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAATTTTTTTGG-CGTTG
* *
1054 AATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGATCAGTTTTTT
388 AATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAG-TTTTT
* * * *
1119 TGCAAAATTTTAGCCGATAT--TGTATACGTCACGGTTTTTGGCTAAAAACGCGTTTCGGGGACC
452 TGCAAAATTTTAGCCGAAATCGTGTA-ACATAACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCC
* * * *
1182 TGACTCAGTTTTGCATTATTTTTGGCAGAAAGTCACCTCGAAATATCTGTATTCATCTAATCAAA
516 TGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGTATTCATCTAACCAAA
* * *
1247 TCTCAGCCACGTTAGATTTACGGATTTAGTTTTA-TGAGTATTTGAATCTTGTTTCGATTTAATT
581 TCTCAGCCACGTTGGATTTACAGATTTATTTTTACT-AGTATTTGAATCTTGTTTCGATTTAATT
1311 AGAAATGTATTGTGGCAGAA
645 AGAAATGTATTGTGGCAGAA
1331 AATGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGAATTGAATTATATGATT
1 AATGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGAATTGAATTATATGATT
*
1396 TTTCTGAGTGTTGTGGCAAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTGGAAAATTTTA
66 TTTCTGAGTATTGTGGC-AAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTGGAAAATTTTA
1461 GCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGT
130 GCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGT
*
1526 TTTGCATGATTTTTGGCAGAAAGTCTCCTCGAAATATCTTTATTCATCTAACCAAATCTCAGCCA
195 TTTGCATGATTTTTGGCAGAAAGTCTCCTCGAAATATCTGTATTCATCTAACCAAATCTCAGCCA
*
1591 CGATGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAAT
260 CGATGGATTTACAGATTTGTTTTTACGAGCATCTGAGTCTTGTTTCGATTTAATTAGAAATAAAT
* *
1656 T-GAGAAAAAGATGGAAAAACGATATTAGAAGCGTGAAAAGCATTAAAATTTTTTTGGCGTTGAA
325 TCGAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAATTTTTTTGGCGTTGAA
** *
1720 TTATATGATTTTTCTGAGTATTGTGGCAAAAGTTTGGGGAAAATCATTTCGGGTCAGTATTTTTG
390 TTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGT-TTTTTG
* *
1785 CAAAATTTTAGCCGAAATCGTGTAACATAACGGTTTTTGGTTAAAAATGCGTTTCGGGGCCCTGA
454 CAAAATTTTAGCCGAAATCGTGTAACATAACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCCTGA
*
1850 CTCAGTTTTGCATGATTTTTGGCAGAAAGACTCTTCGAAATATCTGTATTCATCTAACCAAATCT
519 CTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGTATTCATCTAACCAAATCT
*
1915 CAGCCACGTTGGATTTACGGATTTATTTTTACTAGTATTTGAATCTTGTTTCGATTTAATTAGAA
584 CAGCCACGTTGGATTTACAGATTTATTTTTACTAGTATTTGAATCTTGTTTCGATTTAATTAGAA
1980 ATGTATTGTGGCAGAA
649 ATGTATTGTGGCAGAA
1996 AATGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGAATTGAATTATATGATT
1 AATGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGAATTGAATTATATGATT
2061 TTTCTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTGGAAAATTTTAG
66 TTTCTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTGGAAAATTTTAG
* *
2126 CCGAAATCGTGTACTAACCATCACGGTTTTTCGCTGAAAACGCGTTTCGGAGCCCTGACTCAGTT
131 CCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTT
* * *
2191 TTGCATGATTTTTGGTAGAAAGACTCCTCGAAATATCTGTATTTATCTAACCAAATCTCAGCCAC
196 TTGCATGATTTTTGGCAGAAAGTCTCCTCGAAATATCTGTATTCATCTAACCAAATCTCAGCCAC
*
2256 GATGGATTTACAGATTTGTTTTTACGAGCATCTGAGTCCTGTTTCGATTTAATTA-AGAATAAAT
261 GATGGATTTACAGATTTGTTTTTACGAGCATCTGAGTCTTGTTTCGATTTAATTAGA-AATAAAT
* * *
2320 TCGTA-AAAAAAATGGAAAAACGATATTAGAACCGTGAAAAACATTAAAATTTTTTTGGCATTAA
325 TCG-AGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAATTTTTTTGGCGTTGA
* * *
2384 ATTATATGAGTTTTCTGAGTATTGTGGCAAAAAATAGGGGAAAATATTTTCGGGTCAGTTTTTTG
389 ATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTG
* * *
2449 CCAAATTTTAGCCGAAATC--G--------CGGTTTTTGGCTAAAAACGCGTTTCGGAGCCCTAA
454 CAAAATTTTAGCCGAAATCGTGTAACATAACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCCTGA
* *
2504 CTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATCTCTGTATTCATCTAACAAAATCT
519 CTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGTATTCATCTAACCAAATCT
* * * * *
2569 CAGCCACGTTGGATTTACAGATTTCTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAA
584 CAGCCACGTTGGATTTACAGATTTATTTTTACTAGTATTTGAATCTTGTTTCGATTTAATTAGAA
** * *
2634 ATAAATTG-AG-AAAA
649 ATGTATTGTGGCAGAA
** * **
2648 AGATGGAAAAACGATATTAGAAGCGT-AAAAAGCTTTAAAATTTTTTTGGCGTTGAATTATATGA
1 A-ATGGAAAAACGATATTAGAAGCGTGAAAAA-CCCTAAAATATTTTTGGAATTGAATTATATGA
* * **
2712 TTTTTCTGAGTATTGTGGCAAAAAA-TGGGGAAAATCTTTTTGGGTCATTTTTTTCCAAAATTTT
64 TTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTGGAAAATTTT
* * * * * * *
2776 AGCCAAAATCTTGTACAAACCATCACGGTTTTTTTGTTGAAAATGCGTTTCGGAGCCCTGACTCA
129 AGCCGAAATCGTGTACTAACCATCACGG-TTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCA
* * *
2841 GTTTTGCATGATTTTTGGTAGAAAGACTCCTC-TAATATCTGTATTCATCTAACCAAATCTCAGC
193 GTTTTGCATGATTTTTGGCAGAAAGTCTCCTCGAAATATCTGTATTCATCTAACCAAATCTCAGC
* *
2905 CACGATGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTAGAAATAA
258 CACGATGGATTTACAGATTTGTTTTTACGAGCATCTGAGTCTTGTTTCGATTTAATTAGAAATAA
* * * *
2970 ATT-GAGAAAAAGATGGAAAAACTATATTAGAACCGTGAAAAGCATTAAAATTTTTTTGGCGTTG
323 ATTCGAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAATTTTTTTGGCGTTG
*
3034 AATTATATGATTTTTCTGGGTATTGTGGCAAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTT
388 AATTATATGATTTTTCTGAGTATTGTGGC-AAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTT
*
3099 TGGAAAATTTTAGCCGAAATCGTGT
452 TGCAAAATTTTAGCCGAAATCGTGT
Statistics
Matches: 2267, Mismatches: 156, Indels: 78
0.91 0.06 0.03
Matches are distributed among these distances:
650 1 0.00
651 81 0.04
652 214 0.09
653 143 0.06
654 159 0.07
662 3 0.00
663 299 0.13
664 550 0.24
665 383 0.17
666 12 0.01
667 104 0.05
668 267 0.12
669 50 0.02
670 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (664 bp):
AATGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGAATTGAATTATATGATT
TTTCTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTGGAAAATTTTAG
CCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTT
TTGCATGATTTTTGGCAGAAAGTCTCCTCGAAATATCTGTATTCATCTAACCAAATCTCAGCCAC
GATGGATTTACAGATTTGTTTTTACGAGCATCTGAGTCTTGTTTCGATTTAATTAGAAATAAATT
CGAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAATTTTTTTGGCGTTGAAT
TATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTGCA
AAATTTTAGCCGAAATCGTGTAACATAACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCCTGACT
CAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGTATTCATCTAACCAAATCTCA
GCCACGTTGGATTTACAGATTTATTTTTACTAGTATTTGAATCTTGTTTCGATTTAATTAGAAAT
GTATTGTGGCAGAA
Done.