Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018151.1 Corchorus olitorius cultivar O-4 contig18184, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129614

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35--830
318
2.5
314
80
6
852
33
13
16
36
1.87
14887--14919
1
33.0
1
100
0
66
100
0
0
0
0.00
19842--19892
19
2.5
21
84
6
61
29
9
15
45
1.79
34199--34282
42
2.0
42
83
4
107
33
29
21
15
1.94
40530--40576
18
2.4
19
83
16
53
14
21
4
59
1.52
40550--40584
18
1.9
18
88
0
52
11
25
2
60
1.45
40949--40985
18
2.1
18
100
0
74
13
0
43
43
1.44
41243--41287
17
2.6
17
89
0
63
46
15
4
33
1.66
56334--56377
21
2.0
23
82
8
56
40
4
11
43
1.61
79400--79425
1
26.0
1
100
0
52
100
0
0
0
0.00
90743--90802
24
2.5
24
83
0
84
26
28
20
25
1.99
95119--95166
24
2.0
25
88
12
73
52
2
10
35
1.48
96235--96279
22
2.1
22
84
12
58
13
8
17
60
1.58
104405--104445
6
6.8
6
94
0
55
43
34
21
0
1.53
104405--104445
12
3.4
12
89
0
64
43
34
21
0
1.53
104408--104442
3
11.7
3
87
0
52
40
34
25
0
1.56
107332--107371
2
20.0
2
100
0
80
50
0
0
50
1.00
122524--122658
63
2.1
63
95
2
245
30
11
22
35
1.89
125544--125875
178
1.9
178
87
2
488
38
14
13
33
1.85
125694--129614
649
6.0
654
84
5
4525
32
14
16
35
1.90

Tables:   1

The End!