Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018155.1 Corchorus olitorius cultivar O-4 contig18188, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 151545
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:3390 original size:51 final size:51
Alignment explanation
Indices: 3314--3421 Score: 207
Period size: 51 Copynumber: 2.1 Consensus size: 51
3304 GCTGTGTGAA
3314 GGCTATACCCTTTGTTTTCTGCTACTTTAATGTAATGCCTTAAAGTTGTCC
1 GGCTATACCCTTTGTTTTCTGCTACTTTAATGTAATGCCTTAAAGTTGTCC
3365 GGCTATACCCTTTGTTTTCTGCTACTTTAATGTAATGCCTTAAAGTTGTCC
1 GGCTATACCCTTTGTTTTCTGCTACTTTAATGTAATGCCTTAAAGTTGTCC
*
3416 AGCTAT
1 GGCTAT
3422 TGACCCAGAA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.43
Consensus pattern (51 bp):
GGCTATACCCTTTGTTTTCTGCTACTTTAATGTAATGCCTTAAAGTTGTCC
Found at i:4466 original size:30 final size:31
Alignment explanation
Indices: 4432--4497 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 31
4422 CTGTGTCTTC
* *
4432 TCATCTGACAAAAC-AAACCCATCATCGTCA
1 TCATCTGACAAAACAAAAACCATCACCGTCA
*
4462 TCATC-GACAAAACAAAAATCATCACCGTCA
1 TCATCTGACAAAACAAAAACCATCACCGTCA
4492 TCATCT
1 TCATCT
4498 TCATCGGTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 8 0.26
30 23 0.74
ACGTcount: A:0.41, C:0.32, G:0.06, T:0.21
Consensus pattern (31 bp):
TCATCTGACAAAACAAAAACCATCACCGTCA
Found at i:32868 original size:27 final size:27
Alignment explanation
Indices: 32830--32883 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
32820 AAATCATAAC
*
32830 CACTCCCGTTATGAGCTTTTCCTTTGA
1 CACTCCCGTTATGAGCTTTTCCATTGA
*
32857 CACTGCCGTTATGAGCTTTTCCATTGA
1 CACTCCCGTTATGAGCTTTTCCATTGA
32884 TTAAGGCTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.17, C:0.28, G:0.17, T:0.39
Consensus pattern (27 bp):
CACTCCCGTTATGAGCTTTTCCATTGA
Found at i:32953 original size:19 final size:19
Alignment explanation
Indices: 32929--32987 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 19
32919 CTGTTTAGCA
32929 ACTGTACAGATGAGATTAT
1 ACTGTACAGATGAGATTAT
* *
32948 ACTGTACAGATTATATTAGGT
1 ACTGTACAGATGAGATTA--T
*
32969 ACTGTATAGATGAGATTAT
1 ACTGTACAGATGAGATTAT
32988 CAGAGAAGCG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
19 17 0.52
21 16 0.48
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (19 bp):
ACTGTACAGATGAGATTAT
Found at i:34290 original size:30 final size:31
Alignment explanation
Indices: 34254--34317 Score: 94
Period size: 32 Copynumber: 2.1 Consensus size: 31
34244 CCTATAAATG
*
34254 ATCTTCAGCAGAAATG-GCAGTAGCAGAAGA
1 ATCTTCAGCAGAAAGGAGCAGTAGCAGAAGA
*
34284 ATCTTCATCAGAAAGGCAGCAGTAGCAGAAGA
1 ATCTTCAGCAGAAAGG-AGCAGTAGCAGAAGA
34316 AT
1 AT
34318 TATTAGCTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 14 0.47
32 16 0.53
ACGTcount: A:0.41, C:0.17, G:0.25, T:0.17
Consensus pattern (31 bp):
ATCTTCAGCAGAAAGGAGCAGTAGCAGAAGA
Found at i:54095 original size:19 final size:20
Alignment explanation
Indices: 54044--54100 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 20
54034 CGCTGCTCTA
54044 ATAATCTCATCTGTACATTAT
1 ATAATCTCATCTGTACA-TAT
*
54065 ATAATCTAATCTGTACA-AT
1 ATAATCTCATCTGTACATAT
* *
54084 GTAATTTCATCTGTACA
1 ATAATCTCATCTGTACA
54101 GTTGCCAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 16 0.50
21 16 0.50
ACGTcount: A:0.35, C:0.18, G:0.07, T:0.40
Consensus pattern (20 bp):
ATAATCTCATCTGTACATAT
Found at i:61227 original size:201 final size:200
Alignment explanation
Indices: 60883--61272 Score: 735
Period size: 201 Copynumber: 1.9 Consensus size: 200
60873 AAGACTCAGA
*
60883 GAATTTACCAAAGGCCCCTTTTGAGGATCGATAAGAAGGCTCCATTTGAACTTTTTTGTCCTTTT
1 GAATTTACCAAAGGCCCCTTTTGAGGATCGATAAGAAGGCTCCATTTGAACTTTTTTGTCATTTT
60948 CTGTCTTTTCTCACTTGCCAATTTACTAAGAAGACCCTAGGTTAGTTTCTAGCCAGTTCTTGCCC
66 CTGTCTTTTCTCACTTGCCAATTTACTAAGAAGACCCTAGGTTAGTTTCTAGCCAGTTCTTGCCC
*
61013 TTGAGCGCTTTTTTGTAATTATCCTTTCCCTTTCACATAAATGTTACAATAAATCATATTCCTAC
131 TTGAGCCCTTTTTTGTAATTATCCTTTCCCTTTCACATAAATGTTACAATAAATCATATTCCTAC
61078 CCAGG
196 CCAGG
*
61083 GAATTTACCAAAGGCCCCTTTTGAGGATCGATAAGGAGGCTCCATTTGAACTTTTTTTGTCATTT
1 GAATTTACCAAAGGCCCCTTTTGAGGATCGATAAGAAGGCTCCATTTGAAC-TTTTTTGTCATTT
*
61148 TCTGTCTTTTCTCTCTTGCCAATTTACTAAGAAGACCCTAGGTTAGTTTCTAGCCAGTTCTTGCC
65 TCTGTCTTTTCTCACTTGCCAATTTACTAAGAAGACCCTAGGTTAGTTTCTAGCCAGTTCTTGCC
61213 CTTGAGCCCTTTTTTGTAATTATCCTTTCCCTTTCACATAAATGTTACAATAAATCATAT
130 CTTGAGCCCTTTTTTGTAATTATCCTTTCCCTTTCACATAAATGTTACAATAAATCATAT
61273 CCGTCTTAAT
Statistics
Matches: 185, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
200 50 0.27
201 135 0.73
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (200 bp):
GAATTTACCAAAGGCCCCTTTTGAGGATCGATAAGAAGGCTCCATTTGAACTTTTTTGTCATTTT
CTGTCTTTTCTCACTTGCCAATTTACTAAGAAGACCCTAGGTTAGTTTCTAGCCAGTTCTTGCCC
TTGAGCCCTTTTTTGTAATTATCCTTTCCCTTTCACATAAATGTTACAATAAATCATATTCCTAC
CCAGG
Found at i:62305 original size:14 final size:14
Alignment explanation
Indices: 62286--62312 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
62276 CCATCTCAAC
62286 TTTTTTTTGCCAAT
1 TTTTTTTTGCCAAT
62300 TTTTTTTTGCCAA
1 TTTTTTTTGCCAA
62313 AAATACCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTTTTTGCCAAT
Found at i:65022 original size:15 final size:15
Alignment explanation
Indices: 64999--65044 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
64989 TAGTAGTATT
64999 ATATATGCAAGAAGA
1 ATATATGCAAGAAGA
* *
65014 ATCTGTGCAA-AA-A
1 ATATATGCAAGAAGA
65027 TATATATGCAAGAAGA
1 -ATATATGCAAGAAGA
65043 AT
1 AT
65045 TAAACTTACC
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
13 1 0.04
14 10 0.42
15 12 0.50
16 1 0.04
ACGTcount: A:0.50, C:0.09, G:0.17, T:0.24
Consensus pattern (15 bp):
ATATATGCAAGAAGA
Found at i:66048 original size:51 final size:51
Alignment explanation
Indices: 65979--66076 Score: 142
Period size: 51 Copynumber: 1.9 Consensus size: 51
65969 AAGTGTAAAC
* *
65979 CAAACGAGCTGATTTGAGATCACCACCCAAGATCATCACAGGTGATCCTAA
1 CAAACGAGCTGATCTGAGATCACCACCCAAGATCATCACAAGTGATCCTAA
* * * *
66030 CAAACGGGGTGATCTGAGATCGCCATCCAAGATCATCACAAGTGATC
1 CAAACGAGCTGATCTGAGATCACCACCCAAGATCATCACAAGTGATC
66077 AAAGATCACC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (51 bp):
CAAACGAGCTGATCTGAGATCACCACCCAAGATCATCACAAGTGATCCTAA
Found at i:70079 original size:32 final size:30
Alignment explanation
Indices: 70017--70080 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
70007 ATTATATATT
* *
70017 ATCTTTAGTTTAATATATTTCACCAAAAAA
1 ATCTTTAGTTTAACATATTTCAACAAAAAA
*
70047 ATCTTTAGTTTAACATATATTCATACATAAAA
1 ATCTTTAGTTTAACATAT-TTCA-ACAAAAAA
70079 AT
1 AT
70081 ATACTTTGTC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 17 0.59
31 4 0.14
32 8 0.28
ACGTcount: A:0.44, C:0.12, G:0.03, T:0.41
Consensus pattern (30 bp):
ATCTTTAGTTTAACATATTTCAACAAAAAA
Found at i:75513 original size:184 final size:184
Alignment explanation
Indices: 75197--75564 Score: 709
Period size: 184 Copynumber: 2.0 Consensus size: 184
75187 TGTGTTCACC
75197 GTATCGGAAATTCTCCCTTTGTGGTCAGTTTTAGTGTTTCTGATGATTATTGGGTAGATTTTCTG
1 GTATCGGAAATTCTCCCTTTGTGGTCAGTTTTAGTGTTTCTGATGATTATTGGGTAGATTTTCTG
*
75262 TTTTATGGCAATTAACATGGTTTCTCGTTGATGTGAATTAATGCAGTTTAAATTGCGGGAGGCAG
66 TTTTATGGCAATTAACATGGTTTCTCGTTGATGTGAATTAATGCAGTTTAAATTGCGGGAAGCAG
75327 AAATGTGTGCTGTGCTTTGCCAGATCAAGCTTGATGCCGAAACTGTTTGCAGTT
131 AAATGTGTGCTGTGCTTTGCCAGATCAAGCTTGATGCCGAAACTGTTTGCAGTT
75381 GTATCGGAAATTCTCCCTTTGTGGTCAGTTTTAGTGTTTCTGATGATTATTGGGTAGATTTTCTG
1 GTATCGGAAATTCTCCCTTTGTGGTCAGTTTTAGTGTTTCTGATGATTATTGGGTAGATTTTCTG
*
75446 TTTTATGGCAATTAACATGGTTTCTCTTTGATGTGAATTAATGCAGTTTAAATTGCGGGAAGCAG
66 TTTTATGGCAATTAACATGGTTTCTCGTTGATGTGAATTAATGCAGTTTAAATTGCGGGAAGCAG
*
75511 AAATGTGTGCTGTGCTTTGCCAGATTAAGCTTGATGCCGAAACTGTTTGCAGTT
131 AAATGTGTGCTGTGCTTTGCCAGATCAAGCTTGATGCCGAAACTGTTTGCAGTT
75565 TAAGGAGAAT
Statistics
Matches: 181, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
184 181 1.00
ACGTcount: A:0.22, C:0.13, G:0.25, T:0.40
Consensus pattern (184 bp):
GTATCGGAAATTCTCCCTTTGTGGTCAGTTTTAGTGTTTCTGATGATTATTGGGTAGATTTTCTG
TTTTATGGCAATTAACATGGTTTCTCGTTGATGTGAATTAATGCAGTTTAAATTGCGGGAAGCAG
AAATGTGTGCTGTGCTTTGCCAGATCAAGCTTGATGCCGAAACTGTTTGCAGTT
Found at i:76602 original size:26 final size:26
Alignment explanation
Indices: 76556--76606 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
76546 TCTTCTAAAT
*
76556 CAGTAGGGTTCACGTAATTGCATAAC
1 CAGTAGGGCTCACGTAATTGCATAAC
* *
76582 CAGTAGGGCTCATGTAGTTGCATAA
1 CAGTAGGGCTCACGTAATTGCATAA
76607 TCGGTACAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
CAGTAGGGCTCACGTAATTGCATAAC
Found at i:76695 original size:52 final size:52
Alignment explanation
Indices: 76630--78427 Score: 2344
Period size: 52 Copynumber: 34.2 Consensus size: 52
76620 GAATAATATA
* * ** *
76630 GCATATTCAGTAGGG-TCATTTAGTTGCATATTCAATAAGGAATCATATATTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGT-AGGGCTCATATAGTT
* * * *
76682 GCATATTTAGTAGGG-TCATACATTTGCATATTCAGTAGGGAATCATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGG-CTCATATAGTT
* *
76734 GCATATTCAGTAGGGAATCATATAGTTGCATATTCAGTAGGGAATCATATAGTT
1 GCATATTCAGTAGGG-CTCATATAGTTGCATATTCAGTAGGG-CTCATATAGTT
* *
76788 GCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTAGGGAATCATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGG-CTCATATAGTT
* *
76841 GCATATTCAGTAGGGAATCATATAGTTGCATATTCAGTAAGGC-CATATAGTT
1 GCATATTCAGTAGGG-CTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
* *
76893 GCATATTCAGTAGGGCCATATAGTTGCATAGTTGCATATTCAGTAAGGCATCATATAGTT
1 GCATATTCAGTAGGG-C-T-CA--T--ATAGTTGCATATTCAGTAGGGC-TCATATAGTT
* *
76953 GCATATTCAGTCGGGCATCATATAGTTGCATATTCAGTAGGACTCATATAGTT
1 GCATATTCAGTAGGGC-TCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
*
77006 GCATATTTAGTAGGGCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
* ** **
77058 GCATATTTAGTAGGGGACATATAGTTGCATATTCAGTAGGGGACATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
*
77110 GCATATTCAGTAGGGCTCATATAGTTGCATATTCATTAGGGGC-CATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTA-GGGCTCATATAGTT
**
77162 GCATATTCAGTAGGGAAGCATATAGTTGCATATTCAGTAGGGGC-CATATAGTT
1 GCATATTCAGTAGGG-CTCATATAGTTGCATATTCAGTA-GGGCTCATATAGTT
*
77215 GCATATTCAGTAGGGAT-ATATAGTTGCATATTCAGTAGGGCTCATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
77266 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGGC-CATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTA-GGGCTCATATAGTT
* * *
77318 GCATATTCAGTTGGGGCTCACATATAGTTGCTTATTCAGTTGGGGCTCACATATAGTT
1 GCATATTCAG-TAGGGCT--CATATAGTTGCATATTCAG-TAGGGCT--CATATAGTT
** * *
77376 GCATATTCAGTAGGGGACATATAGTTGCATATTCAGTAGGG-ACATATAATT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
* *
77427 GCTTATTCAGTAGGGCTCATATAGTTGCATATTCAGTAAGTG-TCATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGT-AGGGCTCATATAGTT
*
77479 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGCATCATATTGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGC-TCATATAGTT
* *
77532 GCATATTCACTAGGGCTCATATAGTTGCATATTCAGTAGGG-ACATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
* * *
77583 GCATATTCAGTAGGG-ACATATACTTGCATATTCAGCAGGGCTCATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
* *
77634 GCATATTCAGTAGGGGC-CATACAGTTGCATATTCAGTAGTGACTCACATATAGTT
1 GCATATTCAGTA-GGGCTCATATAGTTGCATATTCAGTAG-GGCT--CATATAGTT
*
77689 GCATATTCAGTAGGAG-ACATATAGTTGCATATTCAGTAGGGCTCATATAGTT
1 GCATATTCAGTAGG-GCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
* *
77741 GCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTAGGGGTCATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
*
77793 GCATATTCAGTATGGG-TCATATAGTTGAATATTCAGTAGGGGC-CATATAGTT
1 GCATATTCAGTA-GGGCTCATATAGTTGCATATTCAGTA-GGGCTCATATAGTT
*
77845 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTATGGCTCATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
*
77897 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGTTCATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
*
77949 GGATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGGC-CATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTA-GGGCTCATATAGTT
*
78001 GCATATTCAGTAGGGGC-CATATAGTTGCATATTCAGTAGGGCTCATGTAGTT
1 GCATATTCAGTA-GGGCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
* ** *
78053 GCATATTCACTAGGGGACATATAGTTGCATATTCAGTAGGACTCATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
** *
78105 GCATATTCAGTAGGGGACATATAGTTGCATATTCAGTATGGG-ACATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTA-GGGCTCATATAGTT
* * * * *
78157 GCATTTTCAGTAGGGTTCATATAGTTGCATATTCAGTAGGGTTGATATAGTA
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
* * * * * *
78209 GCATTTTCAGTAGGGTTCATATAGTGGCATATTCAGTAGGGTTGATATAGTA
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
78261 GCATATTCAGTAGGGGC-CATATAGTTGCATATTCAGTAGGGCTCATATAGTT
1 GCATATTCAGTA-GGGCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
* ***
78313 GCATATTCAGTAGGTCTCATATAGTTGCATATTCAGTAGTGAAGCATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAG-GGCTCATATAGTT
* * *
78366 G-ATATTCGGTAGGGGC-CATATAGTTGCAGCATATTCTGTAGGG-ACATATAGTT
1 GCATATTCAGTA-GGGCTCATATAGTT---GCATATTCAGTAGGGCTCATATAGTT
78419 GCATATTCA
1 GCATATTCA
78428 AAGCAACATA
Statistics
Matches: 1579, Mismatches: 113, Indels: 106
0.88 0.06 0.06
Matches are distributed among these distances:
50 26 0.02
51 156 0.10
52 883 0.56
53 233 0.15
54 111 0.07
55 95 0.06
56 3 0.00
57 4 0.00
58 42 0.03
59 3 0.00
60 23 0.01
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (52 bp):
GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGCTCATATAGTT
Found at i:76924 original size:33 final size:34
Alignment explanation
Indices: 76887--76957 Score: 117
Period size: 33 Copynumber: 2.1 Consensus size: 34
76877 GTAAGGCCAT
*
76887 ATAGTTGCATATTCAGTAGGGC-CATATAGTTGC
1 ATAGTTGCATATTCAGTAAGGCACATATAGTTGC
76920 ATAGTTGCATATTCAGTAAGGCATCATATAGTTGC
1 ATAGTTGCATATTCAGTAAGGCA-CATATAGTTGC
76955 ATA
1 ATA
76958 TTCAGTCGGG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
33 21 0.60
35 14 0.40
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (34 bp):
ATAGTTGCATATTCAGTAAGGCACATATAGTTGC
Found at i:77018 original size:26 final size:26
Alignment explanation
Indices: 76630--76922 Score: 369
Period size: 27 Copynumber: 11.2 Consensus size: 26
76620 GAATAATATA
*
76630 GCATATTCAGTAGGG-TCATTTAGTT
1 GCATATTCAGTAGGGCTCATATAGTT
* ** *
76655 GCATATTCAATAAGGAATCATATATTT
1 GCATATTCAGT-AGGGCTCATATAGTT
* * *
76682 GCATATTTAGTAGGG-TCATACATTT
1 GCATATTCAGTAGGGCTCATATAGTT
*
76707 GCATATTCAGTAGGGAATCATATAGTT
1 GCATATTCAGTAGGG-CTCATATAGTT
*
76734 GCATATTCAGTAGGGAATCATATAGTT
1 GCATATTCAGTAGGG-CTCATATAGTT
*
76761 GCATATTCAGTAGGGAATCATATAGTT
1 GCATATTCAGTAGGG-CTCATATAGTT
*
76788 GCATATTCAGTAGGGGTCATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTT
*
76814 GCATATTCAGTAGGGAATCATATAGTT
1 GCATATTCAGTAGGG-CTCATATAGTT
*
76841 GCATATTCAGTAGGGAATCATATAGTT
1 GCATATTCAGTAGGG-CTCATATAGTT
*
76868 GCATATTCAGTAAGGC-CATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTT
76893 GCATATTCAGTAGGGC-CATATAGTT
1 GCATATTCAGTAGGGCTCATATAGTT
76918 GCATA
1 GCATA
76923 GTTGCATATT
Statistics
Matches: 247, Mismatches: 16, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
25 71 0.29
26 31 0.13
27 145 0.59
ACGTcount: A:0.32, C:0.12, G:0.22, T:0.34
Consensus pattern (26 bp):
GCATATTCAGTAGGGCTCATATAGTT
Found at i:77079 original size:78 final size:78
Alignment explanation
Indices: 76630--78427 Score: 2343
Period size: 78 Copynumber: 22.8 Consensus size: 78
76620 GAATAATATA
* * ** * *
76630 GCATATTCAGTAGGG-TCATTTAGTTGCATATTCAATAAGGAATCATATATTTGCATATTTAGTA
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGT-AGGGGTCATATAGTTGCATATTCAGTA
* *
76694 GGG-TCATACATTT
65 GGGCTCATATAGTT
* *
76707 GCATATTCAGTAGGGAATCATATAGTTGCATATTCAGTAGGGAATCATATAGTTGCATATTCAGT
1 GCATATTCAGTAGGG-CTCATATAGTTGCATATTCAGTAGGG-GTCATATAGTTGCATATTCAGT
*
76772 AGGGAATCATATAGTT
64 AGGG-CTCATATAGTT
* *
76788 GCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTAGGGAATCATATAGTTGCATATTCAGTA
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGG-GTCATATAGTTGCATATTCAGTA
*
76853 GGGAATCATATAGTT
65 GGG-CTCATATAGTT
* * *
76868 GCATATTCAGTAAGGC-CATATAGTTGCATATTCAGTAGGGCCATATAGTTGCATAGTTGCATAT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGG--GT-CA--T--ATAGTTGCATAT
*
76932 TCAGTAAGGCATCATATAGTT
59 TCAGTAGGGC-TCATATAGTT
* ** *
76953 GCATATTCAGTCGGGCATCATATAGTTGCATATTCAGTAGGACTCATATAGTTGCATATTTAGTA
1 GCATATTCAGTAGGGC-TCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTA
77018 GGGCTCATATAGTT
65 GGGCTCATATAGTT
* *
77032 GCATATTCAGTAGGGCTCATATAGTTGCATATTTAGTAGGGGACATATAGTTGCATATTCAGTAG
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTAG
**
77097 GGGACATATAGTT
66 GGCTCATATAGTT
* *
77110 GCATATTCAGTAGGGCTCATATAGTTGCATATTCATTAGGGGCCATATAGTTGCATATTCAGTAG
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTAG
**
77175 GGAAGCATATAGTT
66 GG-CTCATATAGTT
*
77189 GCATATTCAGTAGGGGC-CATATAGTTGCATATTCAGTAGGGAT-ATATAGTTGCATATTCAGTA
1 GCATATTCAGTA-GGGCTCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTA
77252 GGGCTCATATAGTT
65 GGGCTCATATAGTT
* *
77266 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGGCCATATAGTTGCATATTCAGTTG
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAG-TA
77331 GGGCTCACATATAGTT
65 GGGCT--CATATAGTT
* * *
77347 GCTTATTCAGTTGGGGCTCACATATAGTTGCATATTCAGTAGGGGACATATAGTTGCATATTCAG
1 GCATATTCAG-TAGGGCT--CATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAG
* *
77412 TAGGG-ACATATAATT
63 TAGGGCTCATATAGTT
* * *
77427 GCTTATTCAGTAGGGCTCATATAGTTGCATATTCAGTAAGTGTCATATAGTTGCATATTCAGTAG
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTAG
77492 GGCTCATATAGTT
66 GGCTCATATAGTT
* * *
77505 GCATATTCAGTAGGGCATCATATTGTTGCATATTCACTAGGGCTCATATAGTTGCATATTCAGTA
1 GCATATTCAGTAGGGC-TCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTA
*
77570 GGG-ACATATAGTT
65 GGGCTCATATAGTT
* * * *
77583 GCATATTCAGTAGGG-ACATATACTTGCATATTCAGCAGGGCTCATATAGTTGCATATTCAGTAG
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTA-
*
77647 GGGC-CATACAGTT
65 GGGCTCATATAGTT
* * *
77660 GCATATTCAGTAGTGACTCACATATAGTTGCATATTCAGTAGGAGACATATAGTTGCATATTCAG
1 GCATATTCAGTAG-GGCT--CATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAG
77725 TAGGGCTCATATAGTT
63 TAGGGCTCATATAGTT
*
77741 GCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTAT
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTA-
77806 GGG-TCATATAGTT
65 GGGCTCATATAGTT
* *
77819 GAATATTCAGTAGGGGC-CATATAGTTGCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTA
1 GCATATTCAGTA-GGGCTCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTA
*
77883 TGGCTCATATAGTT
65 GGGCTCATATAGTT
* *
77897 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGTTCATATAGTTGGATATTCAGTAG
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTAG
77962 GGCTCATATAGTT
66 GGCTCATATAGTT
*
77975 GCATATTCAGTAGGGGC-CATATAGTTGCATATTCAGTAGGGGCCATATAGTTGCATATTCAGTA
1 GCATATTCAGTA-GGGCTCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTA
*
78039 GGGCTCATGTAGTT
65 GGGCTCATATAGTT
* ** **
78053 GCATATTCACTAGGGGACATATAGTTGCATATTCAGTAGGACTCATATAGTTGCATATTCAGTAG
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTAG
**
78118 GGGACATATAGTT
66 GGCTCATATAGTT
* * *
78131 GCATATTCAGTATGGG-ACATATAGTTGCATTTTCAGTAGGGTTCATATAGTTGCATATTCAGTA
1 GCATATTCAGTA-GGGCTCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTA
* * *
78195 GGGTTGATATAGTA
65 GGGCTCATATAGTT
* * * * * *
78209 GCATTTTCAGTAGGGTTCATATAGTGGCATATTCAGTAGGGTTGATATAGTAGCATATTCAGTAG
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTA-
78274 GGGC-CATATAGTT
65 GGGCTCATATAGTT
**
78287 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGTCTCATATAGTTGCATATTCAGTAG
1 GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTAG
***
78352 TGAAGCATATAGTT
66 -GGCTCATATAGTT
* * *
78366 G-ATATTCGGTAGGGGC-CATATAGTTGCAGCATATTCTGTA-GGGACATATAGTTGCATATTCA
1 GCATATTCAGTA-GGGCTCATATAGTT---GCATATTCAGTAGGGGTCATATAGTTGCATATTCA
78428 AAGCAACATA
Statistics
Matches: 1543, Mismatches: 130, Indels: 93
0.87 0.07 0.05
Matches are distributed among these distances:
76 47 0.03
77 144 0.09
78 740 0.48
79 224 0.15
80 147 0.10
81 116 0.08
82 7 0.00
83 5 0.00
84 45 0.03
85 45 0.03
87 23 0.01
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (78 bp):
GCATATTCAGTAGGGCTCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTAG
GGCTCATATAGTT
Found at i:77156 original size:26 final size:26
Alignment explanation
Indices: 76630--78427 Score: 2044
Period size: 26 Copynumber: 68.3 Consensus size: 26
76620 GAATAATATA
* *
76630 GCATATTCAGTA-GGGTCATTTAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
* *** *
76655 GCATATTCAATAAGGAATCATATATTT
1 GCATATTCAGT-AGGGGCCATATAGTT
* * * *
76682 GCATATTTAGTA-GGGTCATACATTT
1 GCATATTCAGTAGGGGCCATATAGTT
**
76707 GCATATTCAGTAGGGAATCATATAGTT
1 GCATATTCAGTAGGG-GCCATATAGTT
**
76734 GCATATTCAGTAGGGAATCATATAGTT
1 GCATATTCAGTAGGG-GCCATATAGTT
**
76761 GCATATTCAGTAGGGAATCATATAGTT
1 GCATATTCAGTAGGG-GCCATATAGTT
*
76788 GCATATTCAGTAGGGGTCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
**
76814 GCATATTCAGTAGGGAATCATATAGTT
1 GCATATTCAGTAGGG-GCCATATAGTT
**
76841 GCATATTCAGTAGGGAATCATATAGTT
1 GCATATTCAGTAGGG-GCCATATAGTT
*
76868 GCATATTCAGTA-AGGCCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
76893 GCATATTCAGTA-GGGCCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
* *
76918 GCATAGTTGCATATTCAGTAAGG-CATCATATAGTT
1 GCATA-TT-C--AGT-AG--GGGCCAT-AT--AGTT
*
76953 GCATATTCAGT-CGGGCATCATATAGTT
1 GCATATTCAGTAGGGGC--CATATAGTT
*
76980 GCATATTCAGTA-GGACTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
*
77006 GCATATTTAGTA-GGGCTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
77032 GCATATTCAGTA-GGGCTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
* *
77058 GCATATTTAGTAGGGGACATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
*
77084 GCATATTCAGTAGGGGACATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
77110 GCATATTCAGTA-GGGCTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
*
77136 GCATATTCATTAGGGGCCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
77162 GCATATTCAGTAGGGAAG-CATATAGTT
1 GCATATTCAGTAGGG--GCCATATAGTT
77189 GCATATTCAGTAGGGGCCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
**
77215 GCATATTCAGTA-GGGATATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
77240 GCATATTCAGTA-GGGCTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
77266 GCATATTCAGTA-GGGCTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
77292 GCATATTCAGTAGGGGCCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
*
77318 GCATATTCAGTTGGGGCTCACATATAGTT
1 GCATATTCAGTAGGGG--C-CATATAGTT
* *
77347 GCTTATTCAGTTGGGGCTCACATATAGTT
1 GCATATTCAGTAGGGG--C-CATATAGTT
*
77376 GCATATTCAGTAGGGGACATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
* *
77402 GCATATTCAGTA-GGGACATATAATT
1 GCATATTCAGTAGGGGCCATATAGTT
*
77427 GCTTATTCAGTA-GGGCTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
* * *
77453 GCATATTCAGTAAGTGTCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
77479 GCATATTCAGTA-GGGCTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
*
77505 GCATATTCAGTA-GGGCATCATATTGTT
1 GCATATTCAGTAGGGGC--CATATAGTT
*
77532 GCATATTCACTA-GGGCTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
*
77558 GCATATTCAGTA-GGGACATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
* *
77583 GCATATTCAGTA-GGGACATATACTT
1 GCATATTCAGTAGGGGCCATATAGTT
*
77608 GCATATTCAGCA-GGGCTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
*
77634 GCATATTCAGTAGGGGCCATACAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
**
77660 GCATATTCAGTAGTGACTCACATATAGTT
1 GCATATTCAGTAG-G-GGC-CATATAGTT
* *
77689 GCATATTCAGTAGGAGACATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
77715 GCATATTCAGTA-GGGCTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
*
77741 GCATATTCAGTAGGGGTCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
*
77767 GCATATTCAGTAGGGGTCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
* *
77793 GCATATTCAGTATGGGTCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
*
77819 GAATATTCAGTAGGGGCCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
77845 GCATATTCAGTA-GGGCTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
*
77871 GCATATTCAGTA-TGGCTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
77897 GCATATTCAGTA-GGGCTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
**
77923 GCATATTCAGTAGGGTTCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
*
77949 GGATATTCAGTA-GGGCTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
77975 GCATATTCAGTAGGGGCCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
78001 GCATATTCAGTAGGGGCCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
*
78027 GCATATTCAGTA-GGGCTCATGTAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
* *
78053 GCATATTCACTAGGGGACATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
*
78079 GCATATTCAGTA-GGACTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
*
78105 GCATATTCAGTAGGGGACATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
* *
78131 GCATATTCAGTATGGGACATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
* **
78157 GCATTTTCAGTAGGGTTCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
*** *
78183 GCATATTCAGTAGGGTTGATATAGTA
1 GCATATTCAGTAGGGGCCATATAGTT
* ** *
78209 GCATTTTCAGTAGGGTTCATATAGTG
1 GCATATTCAGTAGGGGCCATATAGTT
*** *
78235 GCATATTCAGTAGGGTTGATATAGTA
1 GCATATTCAGTAGGGGCCATATAGTT
78261 GCATATTCAGTAGGGGCCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
78287 GCATATTCAGTA-GGGCTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
*
78313 GCATATTCAGTA-GGTCTCATATAGTT
1 GCATATTCAGTAGGGGC-CATATAGTT
*
78339 GCATATTCAGTAGTGAAG-CATATAGTT
1 GCATATTCAGTAG-G-GGCCATATAGTT
*
78366 G-ATATTCGGTAGGGGCCATATAGTT
1 GCATATTCAGTAGGGGCCATATAGTT
* *
78391 GCAGCATATTCTGTA-GGGACATATAGTT
1 ---GCATATTCAGTAGGGGCCATATAGTT
78419 GCATATTCA
1 GCATATTCA
78428 AAGCAACATA
Statistics
Matches: 1593, Mismatches: 121, Indels: 118
0.87 0.07 0.06
Matches are distributed among these distances:
24 1 0.00
25 210 0.13
26 999 0.63
27 255 0.16
28 18 0.01
29 85 0.05
30 4 0.00
31 2 0.00
32 3 0.00
33 5 0.00
34 2 0.00
35 9 0.01
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (26 bp):
GCATATTCAGTAGGGGCCATATAGTT
Found at i:80598 original size:336 final size:336
Alignment explanation
Indices: 79961--84881 Score: 5063
Period size: 336 Copynumber: 14.7 Consensus size: 336
79951 TTCCTCAGCT
* * * * *
79961 AAAAACTGGCCTGAAAAATTTTTCCTCAA-TTTTTGCCAAAATACTCAGAAAAAAT-ATATAATT
1 AAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAG-AAAAATCATATAATT
* * * * * * *
80024 AAACGTCAAAACAA-T-TGAAGGG-TTTTCACGCTTATAATTTCGTTTTTCCTTTTTTTCC-AAA
65 CAACGCCAAAA-AAGTGTTAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTCCTGAA
* * * * * *
80085 TTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAA-CTCATAAATCAAATG
129 TTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATC-CGTAAATCCATTG
* * * * ** * * ***
80149 TGG--GTGAGATTTGGTTAGCTGAATATAGATATTTTAAGCAGTCTTTTTGTGTAAAATCATGCA
193 TGGCTGAGAGATTTGATTAGATGAATATAAATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCA
* * * * * *
80212 AAACTGAGGT-AGGACATCGAAACGCGTTTTTAGCCACAAATCGTGATGGTTTGTACACGATTTT
258 AAACTGA-GTCAGGGCCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
*
80276 AGCTAAAATTTTGTA
322 AGCTAAAATTTTGCA
*
80291 AAAAATTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGAAAAATCATATAATTC
1 AAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGAAAAATCATATAATTC
* **
80356 AACGCCAAAAAAGTGTTAA-TGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTGCCACAAT
66 AACGCCAAAAAAGTGTTAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT-CCTGAAT
** * *
80420 ACATTTCTAATTAAATCGAAACAAAATTCAGATACTCGTAAAAATAAATCCGTAAATCCAATGTG
130 TTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAATCCATTGTG
*
80485 ACTGAGAGATTTGATTAGATGAATATAAATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCAAA
195 GCTGAGAGATTTGATTAGATGAATATAAATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCAAA
* * ** * *
80550 ACTGAGTCAGGGCCCCAAAATACGTTTTCAGTCAAAAACCGTGATGGTTAGTACACGATTTC-GA
260 ACTGAGTCAGGGCCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAG-
80614 CTAAAATTTTGCA
324 CTAAAATTTTGCA
** *
80627 AAAAACTGACCCGAAAAGTTTTTCCATAATTTTTTGCTACAATACTCAGAAAAATCATATAATTC
1 AAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGAAAAATCATATAATTC
* * * ** *
80692 AACGCCAAAAAGAATG--AAGGGTTTTTCACGCTTCTGATATCATTTTTCTTTTTTTTTTTTCTG
66 AACGCCAAAAA-AGTGTTAAGGGTTTTTCACGCTTCTAATATCGTTTTTC---CATTTTTTCCTG
* *
80755 AATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTAAATCCATT
127 AATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAATCCATT
** * *
80820 GTGGCT-A-AGATTTGATTAGATGAATATGTATATTTCGAGGAGTCTTTCTTCCAAAAATCATGC
192 GTGGCTGAGAGATTTGATTAGATGAATATAAATATTTCGAGAAGTCTTTCTGCCAAAAATCATGC
* *
80883 AAAACTGAGCCAGAGCCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
257 AAAACTGAGTCAGGGCCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
*
80948 AGCTAAAATTTTTCA
322 AGCTAAAATTTTGCA
* **
80963 AAAAATTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCATTAAAATCATATAATTC
1 AAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGAAAAATCATATAATTC
* * ** * *
81028 AATGCC--AAAAGTATTATAGGGTTTTTCATTCTTCTAATATCGTTTTCCCAAATTTTTCC-GAA
66 AACGCCAAAAAAGTGTTA-AGGGTTTTTCACGCTTCTAATATCGTTTTTCC-ATTTTTTCCTGAA
* * * * * *
81090 TTTATTTCTAATTTAATAGAAACAAGATTTAGATGCTCGTAAAAACAAATCCGTAAATTCATTGT
129 TTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAATCCATTGT
* * * ** ** *
81155 GGCTGAGA-TTTTGGTTAGATGAATACAAATATTTTAAGGCGTCTTTCTGCCAAAAGTCATGCAA
194 GGCTGAGAGATTTGATTAGATGAATATAAATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCAA
* * * *
81219 AACTAAGGCAGGGCCCCGAAACGCGTTTTTAGCGAAAAACCGT-A-----ACGTACAC-----CA
259 AACTGAGTCAGGGCCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTA-GTACACGATTTCA
** *
81273 --T---A-TCGGCT
323 GCTAAAATTTTGCA
* * * * *
81281 AAAAACTGGCCCGAAGAA-TTTTTACTCAATTCTTTGCCAAAATACTCAGAAAAAAT-ATATAAT
1 AAAAACTGACCCGAA-AAGTTTTTCCCCAATTTTTTGCCACAATACTCAG-AAAAATCATATAAT
* ** * * * *
81344 TAAACATCAAAACAA-T-TGAAGGG-TTTTCACGCTTATAATTTCGTTTTTCTTTCTCTTTTTTT
64 TCAACGCCAAAA-AAGTGTTAAGGGTTTTTCACGCTTCTAATATCG---TT-TTTC-C--ATTTT
* * * * * * * *
81406 TTCC-AAATTAATGTCTACTTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAACCCGTAAA
121 TTCCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAA
* * * * * * ***
81470 TCCAATGTGG--GTGAGATTT-ATTTAGCTGAATATAGATATTTCAAGCAGTCTTTCTGTGTAAA
186 TCCATTGTGGCTGAGAGATTTGA-TTAGATGAATATAAATATTTCGAGAAGTCTTTCTGCCAAAA
* * * * *
81532 ATCATGCAAAACTGAGAT-AGGGCCTCGACACACGTTTTTAGCCACAAATCGTGATGGTCAGTAC
250 ATCATGCAAAACTGAG-TCAGGGCCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTAC
**
81596 ACGATTTTGGCTAAAATTTTGCA
314 ACGATTTCAGCTAAAATTTTGCA
* *
81619 AAAAACTGATCCGAAAAGTTTTTCCCCAATTTTTTTGCAACAATACTCAGAAAAATCATATAATT
1 AAAAACTGACCCGAAAAGTTTTTCCCCAA-TTTTTTGCCACAATACTCAGAAAAATCATATAATT
* * * * **
81684 GAACGCCAAAAAATTTTTAA-TGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTGCCACAA
65 CAACGCCAAAAAAGTGTTAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT-CCTGAA
** *
81748 TACATTTCTAATTAAATCGAAACAAGATTTAGATACTCGTAAAAATAAATCCGTAAATCCATTGT
129 TTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAATCCATTGT
* *
81813 GGCTGAAAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCAA
194 GGCTGAGAGATTTGATTAGATGAATATAAATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCAA
* * * * * * *
81878 AACTGAGCCAGGGCCTCGAAACGCGTTTTCAACCAAAAACCATGATGGTTAATACACTATTTCGG
259 AACTGAGTCAGGGCCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAG
81943 CTAAAATTTTGCA
324 CTAAAATTTTGCA
* * * *
81956 AAAAGCTGACCCGAAAAGTTTTTCCGCAATTTTTTGCCACAGTACTCAGAAAAATCATATAGTTC
1 AAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGAAAAATCATATAATTC
* * * * *
82021 AA-GACCAAAAACAATG--AAGGGTTTTTCACGATTCTAATTTCGTTTTTACATTTTTTTCTGAA
66 AACG-CCAAAAA-AGTGTTAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTCCTGAA
*
82083 TTTATTTCTAATTAAATCGAAACAAGATTCAGATACT-GATAAAAATAAATCCTTAAATCCATTG
129 TTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCG-TAAAAATAAATCCGTAAATCCATTG
* * * *
82147 TGGCT-A-AGATTTGATTAGATGAATATATATATTTTGAGGAGTCTTTCTTCCAAAAATCATGCA
193 TGGCTGAGAGATTTGATTAGATGAATATAAATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCA
* * * * *
82210 AAACTGAGCCAGAGCCCCGAAACGCGTTTTTAGCCAAAAACAGTGATGGTTATTACACGATTTCA
258 AAACTGAGTCAGGGCCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCA
82275 GCTAAAATTTTGCA
323 GCTAAAATTTTGCA
82289 AAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCA-ATAAAATCATATAATT
1 AAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGA-AAAATCATATAATT
* * **
82353 CAACGCC--AAAAGAGTTATAGGGTTTTTCACGATTCTAATATCGTTTTTCCAAATTTT-CTGAA
65 CAACGCCAAAAAAGTGTTA-AGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTCCTGAA
* *
82415 TTTATTTCCTAATTTAATCGAAACAAGATTCAGATGCTCGTAGAAACA-AAATCCGTAAATCCAT
129 TTTATTT-CTAATTAAATCGAAACAAGATTCAGATACTCGTA-AAA-ATAAATCCGTAAATCCAT
* * * *
82479 TGTGGCTGAGA-TTTTGGTTAGATGAATACTCGAAAAAATCATATAATTCAACGCCAAGT-ATTC
191 TGTGGCTGAGAGATTTGATTAGATGAATA-T------AA--ATAT--TTCGA-G--AAGTCTTTC
*** * * * * * * *
82542 TGTGTAAAATCATGCAAAACTGTGGT-AGGGCCTCGAAACACGTTTTTAGCTACATATCGTGATA
242 TGCCAAAAATCATGCAAAACTG-AGTCAGGGCCTCGAAACGCGTTTTTAGCCAAAAACCGTGATG
** *
82606 GTTAGTACACGATTTTGGCAACAAATTTTGCA
306 GTTAGTACACGATTTCAGCTA-AAATTTTGCA
** *
82638 AAAAACTGACCAAAAAAGTTTTTCCCCAATTTTTTGCTACAATACTCAGAAAAATCATATAATTC
1 AAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGAAAAATCATATAATTC
** * * *
82703 ATGGCCAAAAACAATG--AAGGGTTTTTCACGCTTCTAATATCGTTTTTCTATTTTTTTTTCTGA
66 AACGCCAAAAA-AGTGTTAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA--TTTTTTCCTGA
* * * *
82766 ATTTATTTCTAATTAAATTGAAACAAGATTCAAATACTGGTAAAAATAAATCCTTAAATCCATTG
128 ATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAATCCATTG
* * * *
82831 TGGCT-A-AGATTTGATTAGATGAATATATATATTTCGAGGAGCCTTTCTTCCAAAAATCATGCA
193 TGGCTGAGAGATTTGATTAGATGAATATAAATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCA
* * * * * * *
82894 AAACTGAGCCAGAGCCCCGAAACGCGTTTTTAGCCAAAACCCGTGATAGTTAGTATATGATTTCA
258 AAACTGAGTCAGGGCCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCA
*
82959 ACTAAAATTTTGCA
323 GCTAAAATTTTGCA
* *
82973 AAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTTGCCAAAATACTCAGTAAAATCATATAATT
1 AAAAACTGACCCGAAAAGTTTTTCCCCAA-TTTTTTGCCACAATACTCAGAAAAATCATATAATT
* *
83038 CAACGCC--AAAAGTATTACAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAAATTTTTCC-GA
65 CAACGCCAAAAAAGTGTTA-AGGGTTTTTCACGCTTCTAATATCGTTTTTCC-ATTTTTTCCTGA
* * *
83100 ATATATTTCTAATTTAATCGAAACAAGATTCAGATACTCGT-AAAACAAATCCGTAAATCCATTG
128 ATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAATCCATTG
* * * * * *
83164 TGGCTGAGATA-TTGGTTAGATGAATACTCAGAAAAATCATATAATTCAACGCCGAGTATTATGT
193 TGGCTGAGAGATTTGATTAGATGAATA-T------AA--ATAT--TTCGA-G--AAGTCTT-TCT
* * * * * * * *
83228 G--TAAAATTATGCAAAACTGAGGT-AAGGCATCGAAACGCGTTTTTAGCTACAAATCGTGATAG
243 GCCAAAAATCATGCAAAACTGA-GTCAGGGCCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGG
** * *
83290 TTAGTACACGATTTTGGCAAAAAATTTAGCA
307 TTAGTACACGATTTCAGC-TAAAATTTTGCA
* *
83321 AAAAACTGACCCAAAAAGTTTTTCCCCAATTTTTTGCCAAAATACTCAGAAAAATCATATAATTC
1 AAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGAAAAATCATATAATTC
* * * *
83386 AACACCAAAAATAATG--AAGGGTTTTTCACGCTTCTAATATCGTTTTTCTATTTTTTTTTCTGA
66 AACGCCAAAAA-AGTGTTAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA--TTTTTTCCTGA
* * * *
83449 ATTTATTTCTAATTAAATTGAAACAAGATTCAAATACTGGTAAAAATAAATCCTTAAATCCATTG
128 ATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAATCCATTG
* *
83514 TGGCT-A-AGAATTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCA
193 TGGCTGAGAGATTTGATTAGATGAATATAAATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCA
* * * *
83577 AAACTGAGCCAGGGCCTCGAAACGCGTTTTCAGCCAAAAACCGTGATGGTTAGTACATGATTTCG
258 AAACTGAGTCAGGGCCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCA
*
83642 GCTAAAATTTTGGA
323 GCTAAAATTTTGCA
** * * * *
83656 AAAAGTTGACCTGAAAAG-ATTTCCCCAA-TGTTTGCCATAATACTCAGAAAAATCATATAATTC
1 AAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGAAAAATCATATAATTC
* *** * * * * *
83719 AAAGCCAAAATTTTTTTAA-TGTTTTTCATGCTTCTAATATCGCTTTTCCATTTTTTGACC-CAA
66 AACGCCAAAAAAGTGTTAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT--CCTGAA
** * *
83782 TACATTTCTAATTAAATTGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAATCCAATGT
129 TTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAATCCATTGT
*
83847 GGCTGAGAGATTTGATTAGATGAATATAAATATTTCGAGAAGTCTTTCTGTCAAAAATCATGCAA
194 GGCTGAGAGATTTGATTAGATGAATATAAATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCAA
* * * * * *
83912 AACTGAATCAGAGCCCCGAAACGCGTTTTCAACCAAAAACCGTGATGGTTAGTGCACGATTTCAG
259 AACTGAGTCAGGGCCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAG
*
83977 CTAAAATTTTAC-
324 CTAAAATTTTGCA
* *
83989 TAAAACTGACCCGAATAGTTTTTCCCC-ATGTTTTTGCCACAATACTCAGAAAAATCATATAATT
1 AAAAACTGACCCGAAAAGTTTTTCCCCAAT-TTTTTGCCACAATACTCAGAAAAATCATATAATT
* *
84053 CAACGCC--AAAAGTGTTATAGGGTTTTTCATGCTTCTAATATCGTTTTTCCAAATTTTT-CTGA
65 CAACGCCAAAAAAGTGTTA-AGGGTTTTTCACGCTTCTAATATCGTTTTTCC-ATTTTTTCCTGA
* * *
84115 ATTTATTTCTAATTTAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCGTAAATCCATTG
128 ATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAATCCATTG
* * *
84180 TGGCTGAGA-TTTTGGTTAGATGAATACTCAGAAAAATCATATAATTCAATGCCAAGTAC--TCT
193 TGGCTGAGAGATTTGATTAGATGAATA-T------AA--ATAT--TTCGA-G--AAGT-CTTTCT
*** * * * * * *
84242 GTGTAAAATCATGCAAAACTGAGGT-AGGACCTCGAAACGTGTTCTTAGCTACAAATCGTGAT-G
243 GCCAAAAATCATGCAAAACTGA-GTCAGGGCCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGG
*
84305 ---GTACACGATATTTC--CAAAAATTTTGCAAA
307 TTAGTACACG--ATTTCAGCTAAAATTTTGC--A
*
84334 AAAAACTGACCCGAAAATTTTTTCCCCAATTTTTTGCCACAATACTCAGAAAAATCATATAATTC
1 AAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGAAAAATCATATAATTC
* * * * * *
84399 AACACCAAAAACAATG--AAGGGTTTTT-ACCCTTCTAATATCATTTTTTCAATTTTTTTCTGAA
66 AACGCCAAAAA-AGTGTTAAGGGTTTTTCACGCTTCTAATATC-GTTTTTCCATTTTTTCCTGAA
* *
84461 TTTATTTCTAATTAAATCGAAACAAGATTCAGATACTGGTAAAAATAAATCCTTAAATCCATTGT
129 TTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAATCCATTGT
* * * * *
84526 GGCT-A-AGATTTGACTAGATGAATATATATATTTCGAGGAGTCTTTTTTCCAAAAATCATGCAA
194 GGCTGAGAGATTTGATTAGATGAATATAAATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCAA
* * * *
84589 AACTGAGCCAGAGCCCCGAAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTTCAG
259 AACTGAGTCAGGGCCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAG
84654 CTAAAATTTTGC-
324 CTAAAATTTTGCA
84666 AAAAACTGACCCGAAAAGTTTTTCCCC-ATGTTTTTGCCACAATACTCAGAAAAATCATATAATT
1 AAAAACTGACCCGAAAAGTTTTTCCCCAAT-TTTTTGCCACAATACTCAGAAAAATCATATAATT
** * * ** *
84730 CAAATCC--AAAAGTGTTATAGGGTTTTTCATGCTTCTAATATCGTTTTTCAAAATTTT-CAGAA
65 CAACGCCAAAAAAGTGTTA-AGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTCCTGAA
* * *
84792 TTTATTTCTAATTTAATCGAAACAAGATTCAGATGCTCGTAAAAATAAATTCGTAAATCCATTGT
129 TTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAATCCATTGT
* * *
84857 GGTTGAGA-TTTTGGTTAGATGAATA
194 GGCTGAGAGATTTGATTAGATGAATA
84882 CTCAGAAAAA
Statistics
Matches: 3830, Mismatches: 559, Indels: 402
0.80 0.12 0.08
Matches are distributed among these distances:
317 16 0.00
318 56 0.01
319 10 0.00
320 5 0.00
321 8 0.00
322 79 0.02
323 67 0.02
324 2 0.00
327 6 0.00
328 2 0.00
329 10 0.00
330 41 0.01
331 166 0.04
332 217 0.06
333 484 0.13
334 454 0.12
335 321 0.08
336 704 0.18
337 158 0.04
338 107 0.03
339 41 0.01
340 31 0.01
341 1 0.00
342 23 0.01
343 6 0.00
344 46 0.01
345 154 0.04
346 58 0.02
347 141 0.04
348 127 0.03
349 184 0.05
350 55 0.01
351 36 0.01
352 14 0.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (336 bp):
AAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGAAAAATCATATAATTC
AACGCCAAAAAAGTGTTAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTCCTGAATT
TATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAATCCATTGTGG
CTGAGAGATTTGATTAGATGAATATAAATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCAAAA
CTGAGTCAGGGCCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCT
AAAATTTTGCA
Found at i:87360 original size:97 final size:96
Alignment explanation
Indices: 87133--87348 Score: 258
Period size: 97 Copynumber: 2.2 Consensus size: 96
87123 TAATGAATTT
* * * * * * ** *
87133 TCTTTGAATTTTAGGTCAATTTTGAC-CCCAAAAGTCGTGATAGAAAACCTTTAGATTTTAGACC
1 TCTTTGGATTTTAAGTCATTTTTGACACTCAAAAGTTGTCATAGTTAGCCTTTAGATTTTAGACC
* *
87197 ATTTTTAGCACTCGAAAGTCGTGATAGTTAG
66 ATTTTTAGCACTCCAAAGTCGTGATAGTCAG
* * *
87228 TCTTTGGATTTTAAGTCATTTTTTACACTCAAAAGTTGTCATAGTTAGCCTTTGGATTTTTAGGC
1 TCTTTGGATTTTAAGTCATTTTTGACACTCAAAAGTTGTCATAGTTAGCCTTTAGA-TTTTAGAC
87293 CATTTTTAGCACTCCAAAGTCGTGAT-GATCAG
65 CATTTTTAGCACTCCAAAGTCGTGATAG-TCAG
87325 TCTTTGGATTTTCAA-TCATTTTTG
1 TCTTTGGATTTT-AAGTCATTTTTG
87349 GCACCTAAAA
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
95 22 0.22
96 23 0.23
97 55 0.54
98 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.41
Consensus pattern (96 bp):
TCTTTGGATTTTAAGTCATTTTTGACACTCAAAAGTTGTCATAGTTAGCCTTTAGATTTTAGACC
ATTTTTAGCACTCCAAAGTCGTGATAGTCAG
Found at i:87847 original size:238 final size:237
Alignment explanation
Indices: 87374--88140 Score: 642
Period size: 238 Copynumber: 3.2 Consensus size: 237
87364 GATGCCTTTG
* * * * * * * * * *
87374 GATTTTGGGTCAA-TTTTGACCTCGAAAGTCGTGATTGTTTGCCTTTGGATTTTACGCCAATTTT
1 GATTTTAGGTCAATTTTTGTCC-CAAAAGTCGTGATGGTTAGCCTTTGAATTATAGGTCATTTTT
* * * * * * * * * *
87438 GGGATCTGAAAGTCATGATGATTAGCCTTTGGATTTTAGGTCATT-TT-GACCACATGTAAGTCA
65 AGCACCTGAAGGTCGTGATGGTTAGTCTTTGAATTTTAGGCCATTGTTCG--CACCTGTAAGTCA
* * * *
87501 TGATGATTAGCCTTTGTATTTTAGGCCAATTTTGGCCCTCGAAATTCGTGATGGATT-G-TCTTT
128 TGATGGTTAGCTTTTGTATTTTAAGCCAATTTTGGCCC-CGAAAGTCGTGATGG-TTAGCT-TTT
* *** * ** *
87564 GGATTTTAGGCCATTTTTGGTTCCC-ATAAGTTGTGATATTTAGCCTAAA
190 GGATTTTAGGTCATTTTT-CCACCCGA-AAGTCGTGATGGTTAGCCTATA
*
87613 GATTTTAGGTCAATTTTTGTCCTCAAAAGTCGTGATGGTTAGGCTTTGAATTAT-GGTCCATTTT
1 GATTTTAGGTCAATTTTTGTCC-CAAAAGTCGTGATGGTTAGCCTTTGAATTATAGGT-CATTTT
* * * **
87677 TAGCATCTGAAGGTCGT-ATGGTTAG-CATTTGGA-TTTAGGCCATTGTTGGGTCCTGTAAGTCA
64 TAGCACCTGAAGGTCGTGATGGTTAGTC-TTTGAATTTTAGGCCATTGTTCGCACCTGTAAGTCA
*
87739 TTATGGTTAGCTTTTGTATTTTAAGCCAATTTTGGCCCCGAAAGTCGTGATGGTTAGCTTTTGGA
128 TGATGGTTAGCTTTTGTATTTTAAGCCAATTTTGGCCCCGAAAGTCGTGATGGTTAGCTTTTGGA
* *
87804 TTTTAGGTCATTTTTACCACCCCGAAAGTCGTGATGGTTAGCCTTTT
193 TTTTAGGTCATTTTT-CCA-CCCGAAAGTCGTGATGGTTAGCCTATA
* * * * * * *
87851 GCTTTTAGATC-ATTTTTGGCACCCGAAAGTCGTGATGGTTAGTCTTTGGATTTTAGGTCATTTT
1 GATTTTAGGTCAATTTTT-G-TCCCAAAAGTCGTGATGGTTAGCCTTTGAATTATAGGTCATTTT
* * * * * * *
87915 TTGCACCTGAATGTTGTGATGGTTAGTCTTTGAATTTTAGGCCATTTTTCGCACCCGAAAGTCGT
64 TAGCACCTGAAGGTCGTGATGGTTAGTCTTTGAATTTTAGGCCATTGTTCGCACCTGTAAGTCAT
* *** * * * *
87980 GATGGTTAGCGTTTT-TATTTTACGCCAATTTTGG-TTAGAAAGTCGTGATGATAAGCCTTTGAA
129 GATGGTTAGC-TTTTGTATTTTAAGCCAATTTTGGCCCCGAAAGTCGTGATGGTTAGCTTTTGGA
* * *
88043 TTTTAGGTCATTTTTCGCACCCGAAAGTCGTGATGGTTAGCTTCTG
193 TTTTAGGTCATTTTTC-CACCCGAAAGTCGTGATGGTTAGCCTATA
* * * * *
88089 GATTTTTGGTCAGTTTTGGCTCCCAAAAGTCGTGGTGGTTAGCCTTTAAATT
1 GATTTTAGGTCAATTTTTG-TCCCAAAAGTCGTGATGGTTAGCCTTTGAATT
88141 TCAGTTCAAT
Statistics
Matches: 432, Mismatches: 78, Indels: 37
0.79 0.14 0.07
Matches are distributed among these distances:
236 2 0.00
237 41 0.09
238 192 0.44
239 90 0.21
240 103 0.24
241 4 0.01
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.40
Consensus pattern (237 bp):
GATTTTAGGTCAATTTTTGTCCCAAAAGTCGTGATGGTTAGCCTTTGAATTATAGGTCATTTTTA
GCACCTGAAGGTCGTGATGGTTAGTCTTTGAATTTTAGGCCATTGTTCGCACCTGTAAGTCATGA
TGGTTAGCTTTTGTATTTTAAGCCAATTTTGGCCCCGAAAGTCGTGATGGTTAGCTTTTGGATTT
TAGGTCATTTTTCCACCCGAAAGTCGTGATGGTTAGCCTATA
Found at i:87979 original size:144 final size:144
Alignment explanation
Indices: 87134--88696 Score: 896
Period size: 144 Copynumber: 10.9 Consensus size: 144
87124 AATGAATTTT
* * * * * ** * * *
87134 CTTTGAATTTTAGGTCAATTTTGAC-CCCAAAAGTCGTGATAGAAAACCTTTAGATTTTAGACCA
1 CTTTGGATTTTAGGCCAATTTTGGCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGCCA
* * * * * * ** * *
87198 TTTTTAGCA-CTCGAAAGTCGTGATAGTTAGTCTTTGGATTTTAAGTCATTTTTTACACTCAAAA
66 TTTTTGGCACCT-GAAAGTCGTGATGGTTAGCCTTTGAATTTTAGGCCATTTTTGGCACCCGAAA
* * *
87262 GTTGTCATAGTTAGC
130 GTCGTGATGGTTAGC
* * * * * *
87277 CTTTGGATTTTTAGGCCATTTTTAGCACTCC-AAAGTCGTGATGATCAGTCTTTGGATTTTCA-A
1 CTTTGGA-TTTTAGGCCAATTTTGGCAC-CCGAAAGTCGTGATGGTTAGCCTTTGGATTTT-AGG
* * * * * * *
87340 TCATTTTTGGCACCTAAAAGTAGTGA----T-GCCTTTGGATTTTGGGTCAATTTT-G-ACCTCG
63 CCATTTTTGGCACCTGAAAGTCGTGATGGTTAGCCTTTGAATTTTAGGCCATTTTTGGCACC-CG
* *
87398 AAAGTCGTGATTGTTTGC
127 AAAGTCGTGATGGTTAGC
* * * * * * *
87416 CTTTGGATTTTACGCCAATTTTGGGATCTGAAAGTCATGATGATTAGCCTTTGGATTTTAGGTCA
1 CTTTGGATTTTAGGCCAATTTTGGCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGCCA
* * * * * * *
87481 -TTTTGACCACATGTAAGTCATGATGATTAGCCTTTGTATTTTAGGCCAATTTTGGC-CCTCGAA
66 TTTTTG-GCACCTGAAAGTCGTGATGGTTAGCCTTTGAATTTTAGGCCATTTTTGGCACC-CGAA
* *
87544 ATTCGTGATGGATT-GT
129 AGTCGTGATGG-TTAGC
* ** * ** ***
87560 CTTTGGATTTTAGGCCATTTTTGGTTCCC-ATAAGTTGTGATATTTAGCCTAAAGATTTTAGGTC
1 CTTTGGATTTTAGGCCAATTTTGGCACCCGA-AAGTCGTGATGGTTAGCCTTTGGATTTTAGG-C
* * * * * * * *
87624 AATTTTT-G-TCCTCAAAAGTCGTGATGGTTAGGCTTTGAATTAT-GGTCCATTTTTAGCATCTG
64 CATTTTTGGCACCT-GAAAGTCGTGATGGTTAGCCTTTGAATTTTAGG-CCATTTTTGGCACCCG
*
87686 AAGGTCGT-ATGGTTAGC
127 AAAGTCGTGATGGTTAGC
* ** * * * * * * *
87703 ATTTGGA-TTTAGGCC-ATTGTTGGGTCCTGTAAGTCATTATGGTTAGCTTTTGTATTTTAAGCC
1 CTTTGGATTTTAGGCCAATT-TTGGCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGCC
* * * * * **
87766 AATTTTGGC-CCCGAAAGTCGTGATGGTTAGCTTTTGGATTTTAGGTCATTTTTACCACCCCGAA
65 ATTTTTGGCACCTGAAAGTCGTGATGGTTAGCCTTTGAATTTTAGGCCATTTTTGGCA-CCCGAA
87830 AGTCGTGATGGTTAGC
129 AGTCGTGATGGTTAGC
* * ** * * *
87846 CTTTTGCTTTTAGATCATTTTTGGCACCCGAAAGTCGTGATGGTTAGTCTTTGGATTTTAGGTCA
1 CTTTGGATTTTAGGCCAATTTTGGCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGCCA
* * * * *
87911 TTTTTTGCACCTGAATGTTGTGATGGTTAGTCTTTGAATTTTAGGCCATTTTTCGCACCCGAAAG
66 TTTTTGGCACCTGAAAGTCGTGATGGTTAGCCTTTGAATTTTAGGCCATTTTTGGCACCCGAAAG
87976 TCGTGATGGTTAGC
131 TCGTGATGGTTAGC
* ** * * * * * *
87990 GTTTTTATTTTACGCCAATTTTGGTTA---GAAAGTCGTGATGATAAGCCTTTGAATTTTAGGTC
1 CTTTGGATTTTAGGCCAATTTTGG-CACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGCC
* * * * * * * *
88052 ATTTTTCGCACCCGAAAGTCGTGATGGTTAG-CTTCTGGATTTTTGGTCAGTTTTGGCTCCCAAA
65 ATTTTTGGCACCTGAAAGTCGTGATGGTTAGCCTT-TGAATTTTAGGCCATTTTTGGCACCCGAA
*
88116 AGTCGTGGTGGTTAGC
129 AGTCGTGATGGTTAGC
** * ** * * * * *
88132 CTTTAAATTTCAGTTCAATTTTGAC-CCCGAAAATCGTGATGGTTAACCTTTAGATTTTACGCCA
1 CTTTGGATTTTAGGCCAATTTTGGCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGCCA
* ** * * ***
88196 ATTTTGAG-GTCTGAAAGTCGGGATGGTTAGCATTTGAAATTTTTTTCCATTTTTGGCACCCGAA
66 TTTTTG-GCACCTGAAAGTCGTGATGGTTAGCCTTTG-AATTTTAGGCCATTTTTGGCACCCGAA
*
88260 AGTCGTGATGGTTAAC
129 AGTCGTGATGGTTAGC
* * *** * * * *
88276 CTTTGGAATTTACGCCAATTTTGGGGTGTCTGAAAGTTGTAATGGTTAGCCTTTGGATTTTAGAC
1 CTTTGGATTTTAGGCCAATTTT--GGCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGC
* *** * * * * * * *
88341 CATTTTGGGGTGTCTGAAAGTGGTAATGGTTAGCCTTTGAATTTTAGACCATTTTGGGAACCTGT
64 CATTTT-TGGCACCTGAAAGTCGTGATGGTTAGCCTTTGAATTTTAGGCCATTTTTGGCACCCGA
*** *
88406 AAGTCACAATGATTAGC
128 AAGTCGTGATGGTTAGC
* * * *
88423 CTTTAGATTTTAGGCCAATTTT-G-ATCCTCGAAAGTCGTGATAGATT-GTCTTTGGATTCTAGG
1 CTTTGGATTTTAGGCCAATTTTGGCA-CC-CGAAAGTCGTGAT-GGTTAGCCTTTGGATTTTAGG
** * * * * * *
88485 CCATTTACAGGC-CCCGTAGGTTGTGATGGTTTGCCTTTTGGAATTTT-GGCCATTTTT-GCACT
63 CCATTT-TTGGCACCTGAAAGTCGTGATGGTTAGCC-TTT-GAATTTTAGGCCATTTTTGGCACC
* *
88547 CGAAAGTCATGATGGTTAGT
125 CGAAAGTCGTGATGGTTAGC
* * ** * *
88567 CTTTTGATTTTAGGTCAATTTTAACCCCCAAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGCCA
1 CTTTGGATTTTAGGCCAATTTTGGCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGCCA
* * * * * **
88632 ATTTTGGC-CCTTAAAAGTCTTTATGGATT-GTCTTT-AGATTTTAGATCATTTTTGGCACCCGA
66 TTTTTGGCACC-TGAAAGTCGTGATGG-TTAGCCTTTGA-ATTTTAGGCCATTTTTGGCACCCGA
88694 AAG
128 AAG
88697 CATGATGTAA
Statistics
Matches: 1074, Mismatches: 285, Indels: 121
0.73 0.19 0.08
Matches are distributed among these distances:
137 7 0.01
138 57 0.05
139 22 0.02
140 20 0.02
141 48 0.04
142 168 0.16
143 127 0.12
144 361 0.34
145 135 0.13
146 20 0.02
147 84 0.08
148 25 0.02
ACGTcount: A:0.23, C:0.16, G:0.22, T:0.39
Consensus pattern (144 bp):
CTTTGGATTTTAGGCCAATTTTGGCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGCCA
TTTTTGGCACCTGAAAGTCGTGATGGTTAGCCTTTGAATTTTAGGCCATTTTTGGCACCCGAAAG
TCGTGATGGTTAGC
Found at i:88023 original size:190 final size:189
Alignment explanation
Indices: 87271--88287 Score: 573
Period size: 190 Copynumber: 5.3 Consensus size: 189
87261 AGTTGTCATA
* ** * * *
87271 GTTAGCCTTTGGATTTTTAGGCCATTTTTAGCACTCC-AAAGTCGTGATGATCAGTCTTTGGATT
1 GTTAGCCTTT-GAATTTTAGATCATTTTTGGCAC-CCGAAAGTCGTGATGGTTAG-CTTTGGATT
* * * * ** ** *
87335 TTCA-ATCATTTTTGGCACCTAAAAGTAGTGA----T-GCCTTTGGATTTTGGGTCAATTTTGAC
63 TT-AGGTCAGTTTTGGCACCCAAAAGTCGTGATGGTTAGCCTTTAAATTTCAGGCCAATTTTGAC
* * * ** * * *
87394 CTCGAAAGTCGTGATTGTTTGCCTTTGGATTTTACGCCAATTTTGGGATCTGAAAGTCATGATG
127 CCCGAAAATCGTGATGGTTAACCTTTAGATTTTACGCCAATTTTAGG-TCTGAAAGTCGTGATG
* * * * ** * * * *
87458 ATTAGCCTTTGGATTTTAGGTCA-TTTTGACCACATGTAAGTCATGATGATTAGCCTTTGTATTT
1 GTTAGCCTTTGAATTTTAGATCATTTTTG-GCACCCGAAAGTCGTGATGGTTAG-CTTTGGATTT
* * * * * ** * * *
87522 TAGGCCAATTTTGGC-CCTCGAAATTCGTGATGGATT-GTCTTTGGATTTTAGGCCATTTTTGGT
64 TAGGTCAGTTTTGGCACC-CAAAAGTCGTGATGG-TTAGCCTTTAAATTTCAGGCCAATTTT-GA
* * * ** * ** * * * *
87585 TCCC-ATAAGTTGTGATATTTAGCCTAAAGATTTTAGGTCAATTTT-TGTCCTCAAAAGTCGTGA
126 CCCCGA-AAATCGTGATGGTTAACCTTTAGATTTTACGCCAATTTTAGGT-CT-GAAAGTCGTGA
87648 TG
188 TG
* * * * * * *
87650 GTTAGGCTTTGAATTAT-GGTCCATTTTTAGCATCTGAAGGTCGT-ATGGTTAGCATTTGGA-TT
1 GTTAGCCTTTGAATTTTAGAT-CATTTTTGGCACCCGAAAGTCGTGATGGTTAGC-TTTGGATTT
* ** *** * * * ** * * *
87712 TAGGCCA-TTGTTGGGTCCTGTAAGTCATTATGGTTAGCTTTTGTATTTTAAGCCAATTTTGGCC
64 TAGGTCAGTT-TTGGCACCCAAAAGTCGTGATGGTTAGCCTTTAAATTTCAGGCCAATTTTGACC
* * * * * * * *** *
87776 CCGAAAGTCGTGATGGTTAGCTTTTGGATTTTAGGTCATTTTTACCACCCCGAAAGTCGTGATG
128 CCGAAAATCGTGATGGTTAACCTTTAGATTTTACGCCAATTTTA--GGTCTGAAAGTCGTGATG
*
87840 GTTAGCCTTTTG-CTTTTAGATCATTTTTGGCACCCGAAAGTCGTGATGGTTAGTCTTTGGATTT
1 GTTAGCC-TTTGAATTTTAGATCATTTTTGGCACCCGAAAGTCGTGATGGTTAG-CTTTGGATTT
* * ** * * * * * *
87904 TAGGTCATTTTTTGCACCTGAATGTTGTGATGGTTAGTCTTTGAATTTTAGGCCATTTTTCG-CA
64 TAGGTCAGTTTTGGCACCCAAAAGTCGTGATGGTTAGCCTTTAAATTTCAGGCCAATTTT-GAC-
* * * **
87968 CCCGAAAGTCGTGATGGTTAGCGTTTTTATTTTACGCCAATTTT-GGT-TAGAAAGTCGTGATG
127 CCCGAAAATCGTGATGGTTAACCTTTAGATTTTACGCCAATTTTAGGTCT-GAAAGTCGTGATG
* * * *
88030 ATAAGCCTTTGAATTTTAGGTCATTTTTCGCACCCGAAAGTCGTGATGGTTAGCTTCTGGATTTT
1 GTTAGCCTTTGAATTTTAGATCATTTTTGGCACCCGAAAGTCGTGATGGTTAGCTT-TGGATTTT
* * * **
88095 TGGTCAGTTTTGGCTCCCAAAAGTCGTGGTGGTTAGCCTTTAAATTTCAGTTCAATTTTGACCCC
65 AGGTCAGTTTTGGCACCCAAAAGTCGTGATGGTTAGCCTTTAAATTTCAGGCCAATTTTGACCCC
*
88160 GAAAATCGTGATGGTTAACCTTTAGATTTTACGCCAATTTTGAGGTCTGAAAGTCGGGATG
130 GAAAATCGTGATGGTTAACCTTTAGATTTTACGCCAATTTT-AGGTCTGAAAGTCGTGATG
* ** * *
88221 GTTAGCATTTGAAATTTT-TTTCCATTTTTGGCACCCGAAAGTCGTGATGGTTAACCTTTGGAAT
1 GTTAGCCTTTG-AATTTTAGAT-CATTTTTGGCACCCGAAAGTCGTGATGGTT-AGCTTTGGATT
88285 TTA
63 TTA
88288 CGCCAATTTT
Statistics
Matches: 644, Mismatches: 145, Indels: 77
0.74 0.17 0.09
Matches are distributed among these distances:
185 7 0.01
186 54 0.08
187 9 0.01
189 86 0.13
190 194 0.30
191 87 0.14
192 158 0.25
193 49 0.08
ACGTcount: A:0.22, C:0.16, G:0.23, T:0.40
Consensus pattern (189 bp):
GTTAGCCTTTGAATTTTAGATCATTTTTGGCACCCGAAAGTCGTGATGGTTAGCTTTGGATTTTA
GGTCAGTTTTGGCACCCAAAAGTCGTGATGGTTAGCCTTTAAATTTCAGGCCAATTTTGACCCCG
AAAATCGTGATGGTTAACCTTTAGATTTTACGCCAATTTTAGGTCTGAAAGTCGTGATG
Found at i:88120 original size:286 final size:281
Alignment explanation
Indices: 87187--89023 Score: 863
Period size: 286 Copynumber: 6.5 Consensus size: 281
87177 AAACCTTTAG
* * * * * * *
87187 ATTTTAGACCATTTTTAGCACTCGAAAGTCGTGATAGTTAGTCTTTGGATTTTAAGTCATTTTTT
1 ATTTTAGGCCATTTTTCGCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGTCATTTTTG
* * * * * *
87252 ACACTCAAAAGTTGTCATAGTTAGCCTTTGGATTTTTAGGCCATTTTTAGCACTCCAAAGTCGTG
66 GC-CCCAAAAGTCGTGATGGTTAGCCTTTGGA-TTTTAGGCCATTTTTGGCAC-CCAAAGTCGTG
* * * * * * * * *
87317 ATGATCAGTCTTTGGATTTTCA-ATCATTTTTGGCACCTAAAAGTAGTGAT-G---CCTTTGGAT
128 ATGGTTAGCCTTTAGATTTT-AGGTCATTTTTTG-ACCTAAAAGTCGTGATGGTTAGCTTTGAAT
* * * *
87377 TTTGGGTCAATTTTG-ACCTCGAAAGTCGTGATTGTTTGCCTTTGGATTTTACGCCAATTTTGGG
191 TTT-GGCCATTTTTGCACC-CGAAAGTCGTGATGGTTAGCCTTTGGATTTTACGCCAATTTTGGG
* *
87441 ATCTGAAAGTCATGATGATTAGCCTTTGG
254 -TCTGAAAGTCATGATGATAAGCCTTTGA
* * ** * * * * * *
87470 ATTTTAGGTCATTTTGAC-CACATGTAAGTCATGATGATTAGCCTTTGTATTTTAGGCCAATTTT
1 ATTTTAGGCCATTTT-TCGCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGTCATTTTT
* * * ** *
87534 GGCCCTCGAAATTCGTGATGGATT-GTCTTTGGATTTTAGGCCATTTTTGGTTCCCATAAGTTGT
65 GGCCC-CAAAAGTCGTGATGG-TTAGCCTTTGGATTTTAGGCCATTTTTGGCACCCA-AAGTCGT
** ** * *
87598 GATATTTAGCCTAAAGATTTTAGGTCAATTTTTGTCCTCAAAAGTCGTGATGGTTAGGCTTTGAA
127 GATGGTTAGCCTTTAGATTTTAGGTCATTTTTTGACCT-AAAAGTCGTGATGGTTA-GCTTTGAA
* * * * * *
87663 TTATGGTCCATTTTTAGCATCTGAAGGTCGT-ATGGTTAGCATTTGGA-TTTAGGCC-ATTGTTG
190 TTTTGG-CCATTTTT-GCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTACGCCAATT-TTG
* * * * * *
87725 GGTCCTGTAAGTCATTATGGTTAGCTTTTGT
252 GGT-CTGAAAGTCATGATGATAAGCCTTTGA
* * * *
87756 ATTTTAAGCCAATTTTGGC-CCCGAAAGTCGTGATGGTTAGCTTTTGGATTTTAGGTCATTTTTA
1 ATTTTAGGCCATTTTTCGCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGTCATTTTT-
** * * * **
87820 CCACCCCGAAAGTCGTGATGGTTAGCCTTTTGCTTTTAGATCATTTTTGGCACCCGAAAGTCGTG
65 -GGCCCCAAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGCCATTTTTGGCACCC-AAAGTCGTG
* * * * *
87885 ATGGTTAGTCTTTGGATTTTAGGTCATTTTTTGCACCTGAATGTTGTGATGGTTAGTCTTTGAAT
128 ATGGTTAGCCTTTAGATTTTAGGTCATTTTTTG-ACCTAAAAGTCGTGATGGTTAG-CTTTGAAT
* **
87950 TTTAGGCCATTTTTCGCACCCGAAAGTCGTGATGGTTAGCGTTTTTATTTTACGCCAATTTT-GG
191 TTT-GGCCATTTTT-GCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTACGCCAATTTTGGG
*
88014 T-TAGAAAGTCGTGATGATAAGCCTTTGA
254 TCT-GAAAGTCATGATGATAAGCCTTTGA
* * *
88042 ATTTTAGGTCATTTTTCGCACCCGAAAGTCGTGATGGTTAG-CTTCTGGATTTTTGGTCAGTTTT
1 ATTTTAGGCCATTTTTCGCACCCGAAAGTCGTGATGGTTAGCCTT-TGGATTTTAGGTCATTTTT
* ** * ** * * *
88106 GGCTCCCAAAAGTCGTGGTGGTTAGCCTTTAAATTTCAGTTCAATTTTGAC-CCCGAAAATCGTG
65 GGC-CCCAAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGCCATTTTTGGCACCC-AAAGTCGTG
* * * * * * *
88170 ATGGTTAACCTTTAGATTTTACGCCA-ATTTTGAGGTCTGAAAGTCGGGATGGTTAGCATTTGAA
128 ATGGTTAGCCTTTAGATTTTAGGTCATTTTTTGA--CCTAAAAGTCGTGATGGTTAGC-TTTG-A
** * *
88234 ATTTTTTTCCATTTTTGGCACCCGAAAGTCGTGATGGTTAACCTTTGGAATTTACGCCAATTTTG
189 A-TTTTGGCCATTTTT-GCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTACGCCAATTTT-
** * * * *
88299 GGGTGTCTGAAAGTTGTAATGGTTAGCCTTTGG
251 -GG-GTCTGAAAGTCATGATGATAAGCCTTTGA
* ** *** * * * * ** *
88332 ATTTTAGACCATTTTGGGGTGTCTGAAAGTGGTAATGGTTAGCCTTTGAATTTTAGACCATTTTG
1 ATTTTAGGCCATTTT-TCGCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGTCATTTTT
* *** *** * * *
88397 GGAACCTGTAAGTCACAATGATTAGCCTTTAGATTTTAGGCCAATTTT-G-ATCCTCGAAAGTCG
65 GG-CCCCAAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGCCATTTTTGGCA-CC-C-AAAGTCG
* * * * * *** * *** * * *
88460 TGATAGATT-GTCTTTGGATTCTAGGCCATTTACAGGCCCCGTAGGTTGTGATGGTTTGCCTTTT
126 TGAT-GGTTAGCCTTTAGATTTTAGGTCATTT-TTTGACCTAAAAGTCGTGATGGTTAG-C-TTT
* * * * * *
88524 GGAATTTTGGCCATTTTTGCACTCGAAAGTCATGATGGTTAGTCTTTTGATTTTAGGTCAATTTT
187 -GAATTTTGGCCATTTTTGCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTACGCCAATTTT
**** ** * * * *
88589 AACCCCCAAAAGTCGTGATGGTTAGCCTTTGG
251 -GGGTCTGAAAGTCATGATGATAAGCCTTTGA
* * ** * * * * *
88621 ATTTTAGGCCAATTTTGGC-CCTTAAAAGTCTTTATGGATT-GTCTTTAGATTTTAGATCATTTT
1 ATTTTAGGCCATTTTTCGCACC-CGAAAGTCGTGATGG-TTAGCCTTTGGATTTTAGGTCATTTT
* * * * * *
88684 TGGCACCCGAAAG-CATGAT-G-TA-------AATTTT-GACC--------C-CCGACAGTCGTG
64 TGGC-CCCAAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGCCATTTTTGGCACCCAAAGTCGTG
* * ** **
88729 ATGGTTAGCCTTTGGATTTTAGGTCA-ATTTTGACCCCGAAAGTCGTGATGGTTAGCGTTTGGGT
128 ATGGTTAGCCTTTAGATTTTAGGTCATTTTTTGA-CCTAAAAGTCGTGATGGTTAGC-TTTGAAT
* * * *
88793 TTTAGGTCAATTTTG-ACCATCGAAAGTCCTAATGGTTAG-CTTTCGGATTTTACGCCAATTTTG
191 TTT-GGCCATTTTTGCACC--CGAAAGTCGTGATGGTTAGCCTTT-GGATTTTACGCCAATTTTG
* * * * * * * *
88856 AAGTCGGAAAGTCCTGATGGTTAGTCATTAA
252 -GGTCTGAAAGTCATGATGATAAGCCTTTGA
* * ** * * * *
88887 AGTTTCGAACA-TTTTGGCACCCGAAAGTTGTGATAGATT-GTCTTTGGATTTTAGGTCATTTTT
1 ATTTTAGGCCATTTTTCGCACCCGAAAGTCGTGAT-GGTTAGCCTTTGGATTTTAGGTCATTTTT
* * * * * *
88950 GTCACCCGAAAGTCGTGATTGTTAGCCTTTGGATTCTT-GGTCATTTTTAGCACCCGAAAGTCAT
65 GGC-CCCAAAAGTCGTGATGGTTAGCCTTTGGATT-TTAGGCCATTTTTGGCACCC-AAAGTCGT
89014 GATGGTTAGC
127 GATGGTTAGC
89024 TTTTGAATTT
Statistics
Matches: 1169, Mismatches: 299, Indels: 169
0.71 0.18 0.10
Matches are distributed among these distances:
264 7 0.01
265 68 0.06
266 88 0.08
267 27 0.02
268 2 0.00
269 2 0.00
275 3 0.00
276 4 0.00
277 3 0.00
278 5 0.00
281 7 0.01
282 57 0.05
283 69 0.06
284 9 0.01
285 102 0.09
286 305 0.26
287 100 0.09
288 58 0.05
289 44 0.04
290 35 0.03
291 107 0.09
292 55 0.05
293 10 0.01
294 2 0.00
ACGTcount: A:0.22, C:0.16, G:0.23, T:0.39
Consensus pattern (281 bp):
ATTTTAGGCCATTTTTCGCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGTCATTTTTG
GCCCCAAAAGTCGTGATGGTTAGCCTTTGGATTTTAGGCCATTTTTGGCACCCAAAGTCGTGATG
GTTAGCCTTTAGATTTTAGGTCATTTTTTGACCTAAAAGTCGTGATGGTTAGCTTTGAATTTTGG
CCATTTTTGCACCCGAAAGTCGTGATGGTTAGCCTTTGGATTTTACGCCAATTTTGGGTCTGAAA
GTCATGATGATAAGCCTTTGA
Found at i:88286 original size:49 final size:47
Alignment explanation
Indices: 87134--88696 Score: 610
Period size: 48 Copynumber: 32.7 Consensus size: 47
87124 AATGAATTTT
* * * * * ** *
87134 CTTTGAATTTTAGGTCAATTTTGAC-CCCAAAAGTCGTGATAGAAAAC
1 CTTTGGATTTT-GGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* ** * * * *
87181 CTTTAGATTTTAGACCATTTTTAGCACTCGAAAGTCGTGATAGTTAGT
1 CTTTGGATTTT-GGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* ** * * * * *
87229 CTTTGGATTTTAAGTCATTTTTTACACTCAAAAGTTGTCATAGTTAGC
1 CTTTGGATTTT-GGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* * * * *
87277 CTTTGGATTTTTAGGCCATTTTTAGCACTCC-AAAGTCGTGATGATCAGT
1 CTTTGGA-TTTT-GGTCATTTTTGGCAC-CCGAAAGTCGTGATGGTTAGC
** ** *
87326 CTTTGGATTTTCAATCATTTTTGGCACCTAAAAGTAGTGA----T-GC
1 CTTTGGATTTT-GGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* * *
87369 CTTTGGATTTTGGGTCAATTTT-G-ACCTCGAAAGTCGTGATTGTTTGC
1 CTTTGGATTTT-GGTCATTTTTGGCACC-CGAAAGTCGTGATGGTTAGC
* * * * * * * *
87416 CTTTGGATTTTACGCCAATTTTGGGATCTGAAAGTCATGATGATTAGC
1 CTTTGGATTTT-GGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* ** * * *
87464 CTTTGGATTTTAGGTCA-TTTTGACCACATGTAAGTCATGATGATTAGC
1 CTTTGGATTTT-GGTCATTTTTG-GCACCCGAAAGTCGTGATGGTTAGC
* * * * *
87512 CTTTGTATTTTAGGCCAATTTTGGC-CCTCGAAATTCGTGATGGATT-GT
1 CTTTGGATTTT-GGTCATTTTTGGCACC-CGAAAGTCGTGATGG-TTAGC
* ** * **
87560 CTTTGGATTTTAGGCCATTTTTGGTTCCC-ATAAGTTGTGATATTTAGC
1 CTTTGGATTTT-GGTCATTTTTGGCACCCGA-AAGTCGTGATGGTTAGC
*** * * * *
87608 CTAAAGATTTTAGGTCAATTTTTGTC-CTCAAAAGTCGTGATGGTTAGG
1 CTTTGGATTTT-GGTC-ATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* * * * * *
87656 CTTTGAATTATGGTCCATTTTTAGCATCTGAAGGTCGT-ATGGTTAGC
1 CTTTGGATTTTGGT-CATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* * * * ** * * * *
87703 ATTTGGATTTAGGCCATTGTTGGGTCCTGTAAGTCATTATGGTTAGC
1 CTTTGGATTTTGGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* * * * *
87750 TTTTGTATTTTAAGCCAATTTTGGC-CCCGAAAGTCGTGATGGTTAGC
1 CTTTGGATTTT-GGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* **
87797 TTTTGGATTTTAGGTCATTTTTACCACCCCGAAAGTCGTGATGGTTAGC
1 CTTTGGATTTT-GGTCATTTTTGGCA-CCCGAAAGTCGTGATGGTTAGC
* * * *
87846 CTTTTGCTTTTAGATCATTTTTGGCACCCGAAAGTCGTGATGGTTAGT
1 CTTTGGATTTT-GGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* * * * *
87894 CTTTGGATTTTAGGTCATTTTTTGCACCTGAATGTTGTGATGGTTAGT
1 CTTTGGATTTT-GGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* * *
87942 CTTTGAATTTTAGGCCATTTTTCGCACCCGAAAGTCGTGATGGTTAGC
1 CTTTGGATTTT-GGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* ** * * * * * *
87990 GTTTTTATTTTACGCCAATTTTGGTTA---GAAAGTCGTGATGATAAGC
1 CTTTGGATTTT-GGTCATTTTTGG-CACCCGAAAGTCGTGATGGTTAGC
* *
88036 CTTTGAATTTTAGGTCATTTTTCGCACCCGAAAGTCGTGATGGTTAG-
1 CTTTGGATTTT-GGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* * * *
88083 CTTCTGGATTTTTGGTCAGTTTTGGCTCCCAAAAGTCGTGGTGGTTAGC
1 CTT-TGGA-TTTTGGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
** * * * * * *
88132 CTTTAAATTTCAGTTCAATTTTGAC-CCCGAAAATCGTGATGGTTAAC
1 CTTTGGATTT-TGGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* * * * ** * *
88179 CTTTAGATTTTACGCCAATTTTGAG-GTCTGAAAGTCGGGATGGTTAGC
1 CTTTGGATTTT-GGTCATTTTTG-GCACCCGAAAGTCGTGATGGTTAGC
* * ** *
88227 ATTTGAAATTTTTTTCCATTTTTGGCACCCGAAAGTCGTGATGGTTAAC
1 CTTTG-GATTTTGGT-CATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
** * * *** * * *
88276 CTTTGGAATTTACGCCAATTTTGGGGTGTCTGAAAGTTGTAATGGTTAGC
1 CTTTGG-ATTTTGGTC-ATTTT-TGGCACCCGAAAGTCGTGATGGTTAGC
** * *** * * *
88326 CTTTGGATTTTAGACCATTTTGGGGTGTCTGAAAGTGGTAATGGTTAGC
1 CTTTGGATTTT-GGTCATTTT-TGGCACCCGAAAGTCGTGATGGTTAGC
* ** * * * * *** *
88375 CTTTGAATTTTAGACCATTTTGGGAACCTGTAAGTCACAATGATTAGC
1 CTTTGGATTTT-GGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* * * * *
88423 CTTTAGATTTTAGGCCAATTTT-G-ATCCTCGAAAGTCGTGATAGATT-GT
1 CTTTGGATTTT-GGTCATTTTTGGCA-CC-CGAAAGTCGTGAT-GGTTAGC
* * ** * * * *
88471 CTTTGGATTCTAGGCCATTTACAGGC-CCCGTAGGTTGTGATGGTTTGC
1 CTTTGGATT-TTGGTCATTT-TTGGCACCCGAAAGTCGTGATGGTTAGC
* * * *
88519 CTTTTGGAATTTTGGCCATTTTT-GCACTCGAAAGTCATGATGGTTAGT
1 C-TTTGG-ATTTTGGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* * ** * *
88567 CTTTTGATTTTAGGTCAATTTTAACCCCCAAAAGTCGTGATGGTTAGC
1 CTTTGGATTTT-GGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
* * ** * * *
88615 CTTTGGATTTTAGGCCAATTTTGGC-CCTTAAAAGTCTTTATGGATT-GT
1 CTTTGGATTTT-GGTCATTTTTGGCACC-CGAAAGTCGTGATGG-TTAGC
* *
88663 CTTTAGATTTTAGATCATTTTTGGCACCCGAAAG
1 CTTTGGATTTT-GGTCATTTTTGGCACCCGAAAG
88697 CATGATGTAA
Statistics
Matches: 1157, Mismatches: 298, Indels: 121
0.73 0.19 0.08
Matches are distributed among these distances:
41 3 0.00
42 10 0.01
43 19 0.02
45 1 0.00
46 56 0.05
47 193 0.17
48 615 0.53
49 228 0.20
50 32 0.03
ACGTcount: A:0.23, C:0.16, G:0.22, T:0.39
Consensus pattern (47 bp):
CTTTGGATTTTGGTCATTTTTGGCACCCGAAAGTCGTGATGGTTAGC
Found at i:88322 original size:50 final size:49
Alignment explanation
Indices: 88257--88398 Score: 198
Period size: 49 Copynumber: 2.9 Consensus size: 49
88247 TTTGGCACCC
* *
88257 GAAAGTCGTGATGGTTAACCTTTGGAATTTACG-CCAATTTTGGGGTGTCT
1 GAAAGTCGTAATGGTTAGCCTTTGGAATTTA-GACC-ATTTTGGGGTGTCT
* *
88307 GAAAGTTGTAATGGTTAGCCTTTGGATTTTAGACCATTTTGGGGTGTCT
1 GAAAGTCGTAATGGTTAGCCTTTGGAATTTAGACCATTTTGGGGTGTCT
*
88356 GAAAGTGGTAATGGTTAGCCTTT-GAATTTTAGACCATTTTGGG
1 GAAAGTCGTAATGGTTAGCCTTTGGAA-TTTAGACCATTTTGGG
88399 AACCTGTAAG
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
48 2 0.02
49 53 0.63
50 29 0.35
ACGTcount: A:0.23, C:0.11, G:0.28, T:0.38
Consensus pattern (49 bp):
GAAAGTCGTAATGGTTAGCCTTTGGAATTTAGACCATTTTGGGGTGTCT
Found at i:88844 original size:48 final size:47
Alignment explanation
Indices: 88706--89026 Score: 215
Period size: 48 Copynumber: 6.7 Consensus size: 47
88696 GCATGATGTA
* * *
88706 AATTTTGACCCCCGACAGTCGTGATGGTTAGCCTTTGGATTTTAGGTC
1 AATTTTGACCACCGAAAGTCCTGATGGTTAG-CTTTGGATTTTAGGTC
* *
88754 AATTTTGACC-CCGAAAGTCGTGATGGTTAGCGTTTGGGTTTTAGGTC
1 AATTTTGACCACCGAAAGTCCTGATGGTTAGC-TTTGGATTTTAGGTC
* * * *
88801 AATTTTGACCATCGAAAGTCCTAATGGTTAGCTTTCGGATTTTACGCC
1 AATTTTGACCACCGAAAGTCCTGATGGTTAGCTTT-GGATTTTAGGTC
*** * * ** * * **
88849 AATTTTGAAGTCGGAAAGTCCTGATGGTTAGTCATTAAAGTTTCGAAC
1 AATTTTGACCACCGAAAGTCCTGATGGTTAG-CTTTGGATTTTAGGTC
* ** *
88897 -ATTTTG-GCACCCGAAAGTTGTGATAGATT-GTCTTTGGATTTTAGGTC
1 AATTTTGACCA-CCGAAAGTCCTGAT-GGTTAG-CTTTGGATTTTAGGTC
* * * *
88944 ATTTTTG-TCACCCGAAAGTCGTGATTGTTAGCCTTTGGATTCTT-GGTC
1 AATTTTGACCA-CCGAAAGTCCTGATGGTTAG-CTTTGGATT-TTAGGTC
* * *
88992 -ATTTTTAGCACCCGAAAGTCATGATGGTTAGCTTT
1 AATTTTGACCA-CCGAAAGTCCTGATGGTTAGCTTT
89027 TGAATTTTTT
Statistics
Matches: 216, Mismatches: 47, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
46 1 0.00
47 84 0.39
48 126 0.58
49 5 0.02
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (47 bp):
AATTTTGACCACCGAAAGTCCTGATGGTTAGCTTTGGATTTTAGGTC
Found at i:102157 original size:14 final size:14
Alignment explanation
Indices: 102138--102165 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
102128 TAAATTGAAG
102138 AGTTCTGATTTGCT
1 AGTTCTGATTTGCT
102152 AGTTCTGATTTGCT
1 AGTTCTGATTTGCT
102166 GCTGTTGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.50
Consensus pattern (14 bp):
AGTTCTGATTTGCT
Found at i:106336 original size:13 final size:13
Alignment explanation
Indices: 106313--106344 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
106303 ATTTTTGTAT
106313 ATAAT-AAACTAA
1 ATAATAAAACTAA
106325 ATAATAAAACTAA
1 ATAATAAAACTAA
106338 ATAATAA
1 ATAATAA
106345 TACTGCTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.26
13 14 0.74
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (13 bp):
ATAATAAAACTAA
Found at i:113163 original size:13 final size:13
Alignment explanation
Indices: 113145--113169 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
113135 GATTAATTTT
113145 TGAATTTTTCTTC
1 TGAATTTTTCTTC
113158 TGAATTTTTCTT
1 TGAATTTTTCTT
113170 TTCCTGGACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.12, G:0.08, T:0.64
Consensus pattern (13 bp):
TGAATTTTTCTTC
Found at i:115850 original size:35 final size:33
Alignment explanation
Indices: 115795--115861 Score: 89
Period size: 35 Copynumber: 2.0 Consensus size: 33
115785 CCATAGTAGC
115795 TTTTTTTTTTTACCACAAAACCATATAGAGTAGTA
1 TTTTTTTTTTTACCACAAAACCATA-A-AGTAGTA
** *
115830 TTTTTTTTTTTAGGATAAAACCATAAAGTAGT
1 TTTTTTTTTTTACCACAAAACCATAAAGTAGT
115862 TTATTGATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 6 0.21
34 1 0.03
35 22 0.76
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.45
Consensus pattern (33 bp):
TTTTTTTTTTTACCACAAAACCATAAAGTAGTA
Found at i:125340 original size:15 final size:15
Alignment explanation
Indices: 125320--125350 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
125310 GGCTCATTTG
125320 TCTTCACTCTTCTTC
1 TCTTCACTCTTCTTC
*
125335 TCTTCATTCTTCTTC
1 TCTTCACTCTTCTTC
125350 T
1 T
125351 TATTCTATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.06, C:0.35, G:0.00, T:0.58
Consensus pattern (15 bp):
TCTTCACTCTTCTTC
Found at i:129275 original size:19 final size:19
Alignment explanation
Indices: 129251--129289 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
129241 TAAAACAGTT
129251 TGGTGAAAATTTGACTTGC
1 TGGTGAAAATTTGACTTGC
129270 TGGTGAAAATTTGACTTGC
1 TGGTGAAAATTTGACTTGC
129289 T
1 T
129290 AAAAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.38
Consensus pattern (19 bp):
TGGTGAAAATTTGACTTGC
Found at i:132124 original size:13 final size:13
Alignment explanation
Indices: 132106--132138 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
132096 TCAAAAACAA
*
132106 CTGAAAAGTACTT
1 CTGAAAAGCACTT
132119 CTGAAAAGCACTT
1 CTGAAAAGCACTT
132132 CTGAAAA
1 CTGAAAA
132139 ATCCGTTTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.24
Consensus pattern (13 bp):
CTGAAAAGCACTT
Found at i:138490 original size:12 final size:12
Alignment explanation
Indices: 138471--138524 Score: 58
Period size: 12 Copynumber: 4.6 Consensus size: 12
138461 ATAATAATCA
138471 ATCA-CATGATC
1 ATCATCATGATC
*
138482 ATGATCATGATC
1 ATCATCATGATC
*
138494 ATCATCATCATC
1 ATCATCATGATC
*
138506 ATCACCATCG-TC
1 ATCATCAT-GATC
138518 ATCATCA
1 ATCATCA
138525 ACAAGAGAGC
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
11 3 0.09
12 32 0.91
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (12 bp):
ATCATCATGATC
Found at i:138499 original size:3 final size:3
Alignment explanation
Indices: 138479--138524 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
138469 CAATCACATG
* * * *
138479 ATC ATG ATC ATG ATC ATC ATC ATC ATC ATC ACC ATC GTC ATC ATC A
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
138525 ACAAGAGAGC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (3 bp):
ATC
Done.