Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018157.1 Corchorus olitorius cultivar O-4 contig18190, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17582
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:6195 original size:12 final size:12

Alignment explanation


    Indices: 6173--6202  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

       6163 TTCAACCAGT

                        
       6173 ATTAA-TAATTG
          1 ATTAACTAATTG

                        
       6184 ATTAACTAATTG
          1 ATTAACTAATTG

                   
       6196 ATTAACT
          1 ATTAACT

       6203 TATAGTGGTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11    5  0.28
  12   13  0.72

ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43


Consensus pattern (12 bp):   
ATTAACTAATTG
Done.