Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018168.1 Corchorus olitorius cultivar O-4 contig18201, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48130

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--27
2
13.5
2
100
0
54
48
0
0
51
1.00
3809--3877
30
2.3
30
95
2
122
31
13
8
46
1.73
5311--5339
12
2.3
13
94
5
51
41
0
0
58
0.98
6345--6370
11
2.4
11
100
0
52
88
0
11
0
0.52
6765--6804
21
1.9
21
100
0
80
40
15
25
20
1.90
8212--8274
16
3.8
16
71
22
58
61
4
6
26
1.40
22378--22417
21
1.9
21
89
0
62
45
7
30
17
1.76
28328--28389
30
2.1
30
87
0
88
24
22
6
46
1.75
28683--28740
27
2.1
27
87
3
80
53
13
17
15
1.73
31023--31052
15
2.0
15
93
0
51
36
13
23
26
1.92
41788--41814
14
1.9
14
100
0
54
37
25
37
0
1.57
42818--43045
4
57.0
4
99
0
447
24
0
25
50
1.50
46870--46905
16
2.1
19
85
15
51
55
2
0
41
1.14

Tables:   1

The End!